LOCUS HPV7 8027 bp ds-DNA VRL 04-OCT-1993 DEFINITION Human papillomavirus type 7 (HPV-7), complete genome. ACCESSION X74463 SOURCE Human papillomavirus type 7 DNA. ORGANISM Human papillomavirus type 7 Viridae; ds-DNA nonenveloped viruses; Papovaviridae; Papillomavirus. REFERENCE 1 (bases 1 to 8027) AUTHORS Egawa,K., Delius,H., Matsukura,T., Kawashima,M. and De Villiers,E.M. TITLE Two novel types of human papillomavirus, HPV63 and HPV65 comparisons of their distinct clinical and histological features and their DNA sequences to other HPV types JOURNAL Virology 194, 789-799 (1993) STANDARD full staff_review COMMENT Submitted (27-JAN-1993) on tape to the EMBL Data Library by: H. Delius, Deutsches Krebsforschungszentrum, Abt ATV, Im Neuenheimer Feld 506, W -6900 Heidelberg, FRG. Clone = insert in HindIII site of pBR322. FEATURES Location/Qualifiers CDS 102..566 /note="putative" /note="ORF E6 from bp 90 to 566" /product="transforming protein" /gene="E6" /note="putative" /codon_start=1 /translation="MSARCGSTARTLFELCDQCNITLPTLQINCIFCNSILQTAEVLA FAFRELYVVWRNDFPFAACVKCLEFYGKVNQYRNFRYAAYAPTVEEETGLTILEVRIR CCKCHKPLSPVEKTNHIVKKTQFFKLQDSWTGYCLHCWKKCMEKGQRSETSC" CDS 527..862 /note="putative" /note="ORF E7 from bp 482 to 862" /product="transforming protein" /gene="E7" /note="putative" /codon_start=1 /translation="MHGERPTLGDIVLDLQPEPVSLSCNEQLDSSDSEDDHEQDQLDS SHNRQREQPTQQDLQVNLQSFKIVTHCVFCHCLVRLVVHCTATDIRQVHQLLMGTLNI VCPNCAATA" CDS 868..2808 /note="putative" /note="ORF E1 from bp 790 to 2808" /product="replication protein" /gene="E1" /note="putative" /codon_start=1 /translation="MADDSGTEDVGSGCSGWFLVEAVVDKQTGDVVSEDEDEDAIEDS GYDMVDFINDTVVSEHEELSNAQALLHAQQTCADAVELCELKRKYISPYVSPIQCSEP SVDGDLSPRLHAIKLGGGKKAKRRLFERLEQRDSGYGYSQVETTETQVEEEHGEPEGI EGGSGRAATVETEAVEVLEESSDVIQQLSPRTQVVELFKCKDLNAKLCGKFKELFGVG FHDLVRQFKSDKSTCTDWVYAVFGVNPTIAEGFHTLLKGQALYLHTQWTTCRWGMVLL ALCRYKVAKNRETVVRQLAKMLNVPDNQLMVQPPKLQSSAAALFWFRSGMGNGSEVSG TTPEWIAKQTMLEHSFAEAQFSLTQMVQWAYDNGHTDECEIAYYYAQIADIDANAAAF LKSNNQAKYVRDCAAMCKHYRLAEMRRMSMADWIKHRGEKCDEGDWKPIVKLLRYQHI DIIVFLAALKKWLHGIPKKNCICIVGPPDTGKSCFGMSLMHFLQGTIISFVNSCSHFW LQSLVDAKVAMLDDVTSACWAYMDTHMRNLLDGNPTSIDRKHKSLAVIKCPPLLLTSN INIKHDCKYQYLQSRVTVFEFPNPFPFDSNGNAVYELSDANWNSFFKRLASSLELQTT EDEDGETSQAPRFVPGTVVRTL" CDS 2750..3877 /note="putative" /note="ORF E2 from bp 2726 to 3877" /product="regulatory protein" /gene="E2" /note="putative" /codon_start=1 /translation="MEKLARRLDLCQEQLLELYEQDSKQLQHHILHWKYIRYESVIYY TARQMGIKRLGHQVVPSLDVSKAKAHAAIEMQMCLESLQTTEYNLEPWTLQDTSQELW LAEPKKCFKKGGKTVEVRFDCNEHNAMHYTLWTAVYVQVEDTWTKVEGQVDHRGLFYT VHGCTTYYVDFGKEAHTYGKTNDWTVIVGSRVICSPSTVEGLPIVAPVDIRHPAATDA TDATKVHDAPYALPASTTKVYNDSHAPPRKRRRDGDLSISAVDGCSGRKYVDTGNRAR SPDIESNNKIRNSGGGHSTPIIQLEGDANCLKCFRYRLTKVSHLYTNSSTTWRWTTES RTNKNAIITLTYSSVHQRSQFLALVKIPKTIKHSLGMLTIM" CDS 3282..3641 /note="putative" /note="ORF E4 from bp 3258 to 3641" /gene="E4" /note="putative" /codon_start=1 /translation="MGKQMTGLLLWVHALYVLLVLSKGYPLLRLLTSDIPRPPTPPTP PRCTTPPTPCPRRPPKYTTTATHRPESEGETETCPSVQWTDVVEENTWTLETEHARLI LKATTKSGTVVEVILHL" CDS 4426..5796 /note="putative" /note="ORF L2 from bp 4399 to 5796" /product="minor capsid protein" /gene="L2" /note="putative" /codon_start=1 /translation="MVSSRPRRRKRASATQLYQTCKAAGTCPPDVVNKVEQTTVADQI LKWGSMGVFFGGLGIGSGSGSGGRAGYVPLSTGSRAIPPKSLAPDVIARPPVVVDTVA PTDPSIVSLIEESSIIQSGAPSPVIPTEGGFSITSSGTDVPAILDISSTNTVHVTSTT HHNPIFTDPSVVQPIPPVEASGRIIVSHSSITTGAAEEIPMDTFVVHSDPLSSTPVPG VSARPKVGLYSKALQQVEIVDPTFMSTPQRLITYDNPVFDNIEDTLHFEQPSIHNAPD PAFMDIITLHRPALTSRRGVVRFSRVGQRGTMYTRRGTRIGGRVHFFKDISPIASSEE IELHPLVASPNNSDLFDVYADIDDIDENILYSTIDNNTPTSTYSLYPGNSTRIANTSI PLATIPDTFLTSGPDIVFPSVPAGTPYLPVSPSIPAISVLIRGTDYYLNPAYYFRKRR KRILAY" CDS 5798..7315 /note="putative" /note="ORF L1 from bp 5789 to 7315" /product="major capsid protein" /gene="L1" /note="putative" /codon_start=1 /translation="MWQLNENQVYLPPPTPVATIVSTDEYVQRTSLYYHAGSTRLLTI GHPYFELKKPNGDVSVPKVSGHQYRVFRVRLPDPNKFGLSDTSLFNSETQRLVWACVG VEVGRGQPLGVGISGHPYFNKDEDVENSSVYGTVPGQDSRENVAMDYKQTQLCIVGCT PPIGEYWGMGTPCNASKVSPGDCPVLELKSEVIEDGDMVDAGFGAMDFASLQANKSDV PLDLCTSISKYPDYLGMAAEPYGNSLFFFLRREQMFVRHFFNRAGTTGDSVPNDLYIT GSSNRASIAGSIYYSTPSGSLVTSDSQIFNKPLWIQKAQGHNNGICFGNQLFVTVVDT TRSTNLTLCAATQSPTPTPYDNSKFKEYLRHGEEFDLQFIFQLCVITLNAEVMTYIHA MDSSLLDDWNFKIGPPASATLEDTYRFLTNKAIACQRDAPPKEKEDPYKKYKFWEVNL TEKFSSQLDQFPLGRKFLMQAGLRTGPKFKSRKRPAPTSSSSSGSVTPKRKKTKR" source 1..8027 /organism="Human papillomavirus type 7" /sequenced_mol="DNA" BASE COUNT 2458 a 1450 c 1722 g 2397 t ORIGIN 101 bp upstream from beginning of E6 cds 1 tgtttaataa ttgtacagtt actaaagggc gtaaccgaaa acggtccgac cgaaaacggt 61 acatataaaa accaacccaa aaaacctgat ctggggccac tatgtctgca cgttgcggct 121 ccacagctag aactttattt gaattatgtg accagtgcaa tataacattg cctacgttgc 181 aaattaattg catattttgt aacagcattt tacaaacagc tgaggtgctg gcctttgcat 241 ttagagagtt atatgtagtg tggcgcaacg actttccttt tgcagcgtgt gtaaagtgtt 301 tagaatttta tggaaaagtg aatcagtata ggaactttag atacgctgca tatgcaccaa 361 cagtggaaga agaaacagga ttaacaattt tagaagtgag aataagatgc tgcaaatgcc 421 acaaaccatt gtctcctgtg gaaaaaacca accacattgt taagaagaca cagtttttta 481 aactgcaaga ttcgtggaca gggtactgtc tgcactgttg gaagaaatgc atggagaaag 541 gccaacgctc ggagacatcg tgttagactt gcaacccgaa ccagtaagtt taagttgcaa 601 cgagcaatta gacagctcag actcagaaga tgaccatgaa caagaccaac tagacagctc 661 acacaataga cagcgtgagc aacccacgca acaggacttg caagtaaatt tgcaatcatt 721 taaaatagta acacattgtg tattttgtca ctgtttagtt cgcctagtag tccattgtac 781 tgctactgat ataaggcagg ttcatcagtt gctgatgggc acactaaata tagtgtgccc 841 caactgtgca gctacagcgt gacaacaatg gcagacgatt caggtacaga ggatgtgggg 901 tctgggtgtt caggatggtt tttagttgag gctgtggtag ataaacaaac aggtgatgta 961 gtttcagaag atgaagatga ggatgctata gaggacagtg gatatgatat ggtagatttt 1021 attaatgata ctgtagtaag tgaacatgaa gaactaagta atgcacaggc tttgttacat 1081 gcacaacaga catgtgcaga tgctgtagag ttgtgtgagc taaaacgaaa gtacattagt 1141 ccatatgtaa gtcctattca gtgctcagaa ccgtccgtgg acggggattt aagtccaagg 1201 ctgcatgcca taaagcttgg cggcggtaaa aaggctaaaa ggcggttgtt tgagcgattg 1261 gagcagcgag acagtggcta tggctattca caagtggaaa caacagagac acaggtagag 1321 gaagaacatg gcgaaccgga aggtatagag gggggcagtg ggagggctgc gacagttgaa 1381 acggaagcgg ttgaagtgct agaagaaagc agtgatgtta tacagcaact tagtccgcgt 1441 acacaggtgg tagagctgtt taaatgcaag gatttaaatg ctaaactgtg tggtaagttt 1501 aaggaacttt ttggagtggg ctttcacgat ttggttagac agtttaaaag tgataaatca 1561 acgtgtacag attgggtgta cgcagtgttt ggggttaatc ccactatagc agaaggcttt 1621 catacattat taaaaggaca ggcattatac ttacatacac agtggacaac gtgtagatgg 1681 ggtatggtat tgcttgcatt gtgtagatat aaggtagcaa aaaatagaga aacagtagtg 1741 cggcagcttg ccaaaatgtt aaatgtacca gataatcaac taatggtaca accacctaaa 1801 ttacaaagtt ctgcagcggc tttattttgg tttagatcag gaatgggtaa tggaagtgag 1861 gtgtctggca caacaccgga atggatagct aaacaaacaa tgttggaaca tagttttgct 1921 gaagcacagt ttagtttaac tcagatggtg cagtgggcat atgataatgg gcatacagat 1981 gaatgtgaaa tagcatatta ttatgcacaa atagcagata tagatgcaaa tgcagcagcg 2041 tttttaaaaa gtaacaatca agctaaatat gttagagatt gtgcagctat gtgtaagcat 2101 tataggttgg cagaaatgag gcggatgtca atggcagact ggataaagca tagaggtgaa 2161 aaatgtgatg aaggagattg gaagcctata gttaaactac taagatatca acatatagac 2221 ataattgtgt ttttagctgc gttgaaaaaa tggctacatg gaataccaaa aaaaaattgt 2281 atttgtattg ttggacctcc agatactgga aagtcatgtt ttggtatgag tttgatgcat 2341 tttttgcaag gtactataat ttcatttgtt aattcgtgta gccatttttg gttgcaatca 2401 ttagtggacg caaaagtagc tatgttagat gatgtgactt ctgcatgctg ggcctatatg 2461 gatacacaca tgagaaattt attagatgga aacccaacaa gtatagatag aaaacataaa 2521 tcattggctg tgattaaatg tcctccatta ttgttaacat caaatataaa cattaaacat 2581 gattgcaaat atcaatattt acagagtaga gtgacagtgt ttgaatttcc aaatccattt 2641 ccatttgaca gcaacggaaa tgctgtgtat gaattaagtg atgcaaattg gaactccttt 2701 tttaaaaggt tggcgtccag tttagagctg cagacaacag aggacgagga tggagaaact 2761 agccaggcgc ctagatttgt gccaggaaca gttgttagaa ctttatgaac aagacagcaa 2821 acagctacag caccatatat tgcactggaa atatatacgt tatgaaagtg taatatatta 2881 tacagcaaga caaatgggca ttaaacgtct gggccaccag gtggtgccaa gtttagatgt 2941 gtcaaaagcc aaagcccatg cagcaattga aatgcaaatg tgtctagaat ctttgcaaac 3001 tactgaatat aacttagagc catggacgtt acaggacaca agtcaagaac tatggcttgc 3061 agaaccaaag aaatgtttta aaaaaggagg aaagacagta gaagttagat ttgactgtaa 3121 tgaacataat gcaatgcatt atactctatg gactgcagta tatgtacagg tggaggatac 3181 atggacaaag gttgaaggcc aggtggacca cagaggccta ttttatacag tgcatgggtg 3241 cacaacatat tatgtagact ttggaaagga agcacataca tatgggaaaa caaatgactg 3301 gactgttatt gtgggttcac gcgttatatg ttctcctagt actgtcgaag ggctacccat 3361 tgttgcgcct gttgacatca gacatcccgc ggccaccgac gccaccgacg ccaccaaggt 3421 gcacgacgcc ccctacgccc tgcccgcgtc gaccaccaaa gtatacaacg acagccacgc 3481 accgccccga aagcgaagga gagacggaga cttgtccatc agtgcagtgg acggatgtag 3541 tggaagaaaa tacgtggaca ctggaaacag agcacgctcg cctgatattg aaagcaacaa 3601 caaaatcagg aacagtggtg gaggtcattc tacacctata atacaactgg aaggtgatgc 3661 caattgttta aagtgtttta gatataggct aacaaaggtt agccatttat atacaaattc 3721 ttcaactaca tggaggtgga ctacagaatc tagaacaaat aaaaatgcca ttataacatt 3781 aacatatagt agtgtacacc aacggtcaca atttctagca cttgtaaaaa tacctaaaac 3841 tattaaacat agtttaggca tgttaactat aatgtaaata tgtttgtata tttgtaaaaa 3901 acatatgtat ggaacgcaac tgtgaagggt aatgcatatg catttaccac acaaccagcc 3961 aaactgctgt tattggtgtt aatagagtca acgcttggca tactaatagt atatatactc 4021 tgtcttataa ctgcaatttt aatatgcatg catatacctg atttctgtgt ctggagctct 4081 ttgatggcca ctatttctat tctttgcttt ataacgtggg gtgcactaac atctattatt 4141 aacgtatttt ttttagtgtt gttagtgtgg tatttgcctg cactgttcct tcatatgtca 4201 attgtgtatg ctatacaaca agaacaacaa taacaataat tgcaaatatg ttaacctgta 4261 aattagatga tggtgataca tggatggcat tatggatgtt acttacattt ataactgtat 4321 tgttactgtt attggcgttt cattgtagga cattatatgt atacaaatat agtaagtaaa 4381 atactgtgta ttaaataaat atttttatat ttgcagcgcc ttgttatggt gtccagcagg 4441 ccccgtaggc gtaagcgggc gtccgcaaca cagttatatc aaacatgcaa ggcagcaggc 4501 acctgtccac cagatgttgt taataaggtg gagcaaacaa ccgttgcaga tcaaatttta 4561 aaatggggca gcatgggagt gttttttggc ggtcttggca taggttcagg ctctggctca 4621 ggcggccgtg ctggctatgt gcctttgtct acaggttccc gtgcaatacc tcctaaatca 4681 ttagctccag atgttattgc taggccgcct gttgtggtgg atactgtcgc ccccactgat 4741 ccatccattg tatctttaat tgaggaaagt agtattattc agtctggggc tccttcgcca 4801 gtaattccca cagagggtgg gttttcaata acatcatcag gtacagatgt ccctgcaatt 4861 ttagatatat cttctactaa tacagtacat gttacatcta ccacacacca taaccccata 4921 tttactgatc cttcggttgt gcagcctatt ccacctgtag aggctagtgg tcgtatcatt 4981 gtgtcgcatt cctctattac tactggtgca gctgaagaaa tacctatgga cacatttgtt 5041 gttcatagtg atccactgtc cagtacacct gtgcctggtg tgtcagcgcg gcctaaagtt 5101 gggctatata gcaaagcttt gcagcaagta gaaatagtag atccaacatt tatgtccacc 5161 cctcaacgtt taattactta tgacaatcct gtatttgaca acattgaaga tacactacat 5221 tttgaacagc cttctattca taacgcacca gatcctgcct ttatggatat cattacttta 5281 cataggcctg ccttgacctc taggcgtggt gtggtacgtt ttagtagggt gggtcaacgt 5341 ggaaccatgt atacacgtcg tggtacccgt attggtggtc gtgtacactt ttttaaagat 5401 attagtccta tagcttcatc tgaagaaatt gaattgcacc ctctagtggc ctcacctaat 5461 aacagtgacc tttttgatgt ttatgcagat atagatgata ttgatgaaaa tatattatat 5521 tctactatag acaataatac accaacttct acctattcct tgtatccagg taattctaca 5581 cgcatagcaa atacatctat acctcttgcc acaattcctg atacattctt aacatctggt 5641 cctgacatag tgtttccttc tgttcctgca ggtacaccat atttgcctgt gtcaccttct 5701 atacctgcca tatctgtact gattcgcggt actgattatt atttgaatcc tgcatactat 5761 ttcagaaaac gccgaaagcg catattagca tattaggatg tggcaactta atgaaaacca 5821 agtgtattta ccaccgccca cgcctgttgc tacaattgtt agcacagatg agtacgtgca 5881 acgcaccagt ttatattatc atgcaggtag taccaggtta ttaaccatag gacatccata 5941 ttttgaattg aaaaagccta atggcgatgt atcggtgcct aaagtgtctg gacatcaata 6001 cagagtgttt agagtacgct tgcccgaccc taataaattt ggattatcag acacgtcttt 6061 atttaattct gaaacccaac gccttgtatg ggcctgtgtt ggtgttgagg tcggtcgagg 6121 tcagccatta ggtgtaggca ttagtggtca tccatacttt aataaagatg aagatgtgga 6181 aaactcgtct gtatatggaa cagtacctgg tcaggacagc agagaaaatg ttgctatgga 6241 ttataaacaa actcagttat gtattgtagg ctgtactcct cctattggag aatattgggg 6301 tatgggtaca ccgtgcaatg cttctaaagt gtctcctggt gactgtcctg tactagaatt 6361 aaaaagtgaa gttattgagg atggcgacat ggttgatgca ggctttggtg ccatggattt 6421 tgcatcattg caggccaata aaagcgatgt gcctttagat ttatgtacat ctattagtaa 6481 atacccagat tatttaggaa tggctgcaga accgtatggt aatagtttat ttttttttct 6541 tagaagagaa caaatgtttg ttaggcactt ttttaatagg gcaggaacta ctggagacag 6601 tgttccaaat gatttatata taacaggttc atctaatcgc gcttctattg caggcagtat 6661 ttattattcc acaccaagtg gctctctagt tacctctgat tctcagattt ttaataaacc 6721 tttgtggata caaaaggccc agggtcataa caatggcatt tgttttggca atcagttatt 6781 tgttacagtt gtagatacta ctcgtagcac aaatttaaca ttatgtgctg ctacacaatc 6841 gcccacacca acaccatatg acaatagtaa gtttaaagaa tatttacgtc atggggaaga 6901 gtttgattta cagtttattt ttcagttatg tgttattaca ttaaatgcag aggttatgac 6961 atatatacat gctatggatt cttccttatt agatgattgg aattttaaaa ttggtcctcc 7021 agcgtctgca accttggaag atacttatag gtttcttacc aataaagcca tagcatgtca 7081 gcgtgatgca cccccaaaag aaaaggagga tccatataaa aaatataaat tttgggaagt 7141 aaatttaaca gaaaaatttt catctcagtt agatcaattt ccattaggac gtaagtttct 7201 tatgcaggca ggcctacgca cagggcctaa gtttaaatcc aggaagcgac ctgcccctac 7261 ctcttcttcc tcttctgggt cagtcacccc caaacgtaag aaaacaaaac gatgattgtg 7321 tatgtgtgtg tgtgtgatac tcccttgcac tcccttatgt gttgttactc tggaatgtat 7381 gtatgtgttg tttatgtatg tgtgtttgta tatgttgttt atgtgtgaga atgtatttgt 7441 gtgtatgaat gtaatgtatt gttgttgtgt ttgttaataa taaatatatt gtgtgttgtg 7501 tggtaaagta ctttctttgt tttaaaagtt acttattaaa ctcacttatt ttaaaatgtc 7561 tgctctgcac actgcaaccg ttttcggtcg cggttggcaa ctcattacat ttgtcagcat 7621 gtttttataa catgtttaaa attgttagct ttatataact atataaatcc ttcaatttcc 7681 acccataacc gtttccagtc tcggttggca agtcaccatg tttgtcagca tatttgcatt 7741 gcatgtttca aattgctagg tcaaagttcc ctgccaaaaa tgccgcccaa tatgtactat 7801 tagggtgagg ttgccacacc tttaattaca cttttattgc actgttactc atcttatttt 7861 atacgcttcc aaacttgctt ttaggcacat agttttactg cataaacatt tagctaatag 7921 cagtttggca ccacataaca ctatggttaa caaaatacac attactcatg gtacacacct 7981 gcaaaccgct ttcggttgct acacgtttta ttactttcta gttatta