LOCUS HPV55 7822 bp ds-DNA VRL 04-JUL-1995 DEFINITION Human papillomavirus type 55 (HPV55), complete genome. ACCESSION U31791 SOURCE Human papillomavirus type 55 DNA. ORGANISM Human papillomavirus type 55 Viridae; ds-DNA nonenveloped viruses; Papovaviridae; Papillomavirus. REFERENCE 1 (bases 1 to 7822) AUTHORS Delius,H. TITLE Direct Submission JOURNAL Unpublished COMMENT HPV55 was first isolated from a penile condyloma acuminata. In a survey of a large variety of tumours, HPV55 was detected in an additional case of condyloma acuminata. Hybridization and phylogenetic analysis group HPV55 with HPV44, HPV6, HPV11, and HPV13. Cloned HPV55 DNA was obtained from the Papillomavirus Reference Center, Heidelberg and subsequently sequenced by Dr. H. Delius. FEATURES Location/Qualifiers CDS 102..554 /note="ORF E6 from bp 69 to 554" /product="transforming protein" /gene="E6" /note="putative" /codon_start=1 /translation="MESANASTAAQSIDQLCKECNIPMHHLQILCVFCRKTLTTAEVY SFAYKQLYVVFRGNFPFAACAICLELQGKVNQFRHFDFAGYALTVEEETKQSILDVFI RCYLCHKPLCHVEKVRHILEKARFIKLQNTWKGRCFHCWTSCMETILP" CDS 530..823 /note="ORF E7 from bp 485 to 823" /product="transforming protein" /gene="E7" /note="putative" /codon_start=1 /translation="MHGNYPTLKEIVLELDPPDPVGLHCNEQLDSSEDEVDELATQAT QDVTQPYQIVTTCGTCNRNVRLVVQCTGTDICQLHTLLLGSLEILCPVCAPKN" CDS 829..2763 /note="ORF E1 from bp 712 to 2763" /product="replication protein" /gene="E1" /note="putative" /codon_start=1 /translation="MADNTGTEGTGCSGWFLVEAIVEKTTGQQISEDEDEAVDDSGLD MVDFIDDRPITHNSMEAQALLNEQEADAHYAAVQDLKRKYLGSPYVSPLSNIKEAVEC DISPRLDAIKLSRQPKKVKRRLFERPELTDSGYGNIDVEAETQVERNGEPEDCGGGGQ GRDTEEGVEQVETEVQTHSDTQLHTETTRVVELLKCKNIRATLLGKFKDCYGLSYTDL IRQFKSDKTTCGDWVIAAFGVHHSVSEAFQNLIQPVTTYSHIQWLTNAWGMVLLALLR FKVNKNRCTVARMMATRLNIPEDHMLIEPPKIQSGVAALYWFRSSISNASIVTGETPE WITRQTIVEHGLGDNQFKLTEMVQWAYDNDFCEESEIAFEYAQRADIDANARAFLNSN CQAKYVKDCATMCKHYKTAEMKKMSMKQWIKFRSSKYEETGNWKPIVQFLRYQNIEFI PFLTKLKMWLHGTPKKNCIAIVGPPDTGKSCFCMSLIKFLGGTVISYVNSSSHFWLQP LCNAKVALLDDVTQSCWVYMDTYMRNLLDGNPMTIDRKHKSLALIKCPPLIVTSNIDI TKEDKYKYLCSRVTLFTFPNPFPFDRNGNALYDLCESNWKCFFARLSTSLDIQTSEDE DDGDNSQAFRCVPGTVVRTV" CDS 2705..3841 /note="ORF E2 from bp 2678 to 3841" /product="regulatory protein" /gene="E2" /note="putative" /codon_start=1 /translation="METIAKHLDVCQEQLLELYEENSNNLTKHIQHWKCIRYECVLLH KAKQMGLNHIGMQVVPALTVSQTKGHQAIEMQMTLETLLNSDYGMEPWTLQDTSREMW LTAPKYCFKKQGQTVEVKYDCNADNIMEYVSWKYIYVHDTDKWVKVTGHIDYKGLYYV HGGHKTYYTNFEKEAKKYGNSLQWEVCIGSSVICSPASISSTVQDVSIAGPASHTSSS TTTTLAQASPALPTCTSEERVDPPPCKRPRGPTTNTNNARDTVSVRHSDSVDSTNNNI YPNSYNSNKGRDNNFCTATPVVQLQGDPNCLKCLRYRLHAKHKTLFVAASSTWRWTCS DTSSKHALVTLTYVNEEQREQFLNTVRLPPTVTYKVGYMSLQLL" CDS <3162..3596 /note="ORF E4 from bp 3162 to 3596" /gene="E4" /note="putative" /codon_start=1 /translation="TIKGCIMYMAGIKPIIPILKKRLKNMGTHYNGRSVLVAVSYVLL HLYLVLCKTYPLLGLLHTPPPPPPPPLHRPHLHCPPAPPRNAWTRRHVNDPEDPPQTP TTPGTPSVSDTATPWTVQTTTSTLTVTTVTKDGTTIFVQLRL" CDS 3877..4152 /note="ORF E5 from bp 3862 to 4152" /gene="E5" /note="putative" /codon_start=1 /translation="MEHIPIDGTIGATSTSLLPVVLALFVCFVSIVLIIYISDFIVYT SILVLTLLLYMLLWLLLTTALQFYVLTLCVCFFPAWYLHFYIVHTQE" CDS 4325..5707 /note="ORF L2 from bp 4289 to 5707" /product="minor capsid protein" /gene="L2" /note="putative" /codon_start=1 /translation="MAHSRARRRKRASATQLYQTCKAAGTCPSDIIPKVEHNTIADQI LKWGSLGVFFGGLGIGTGSGTGGRTGYIPLQSTPRPEIPSGPTTRPPILVDTVAPGDP SIVSLVEESAIINSGAPELVPPSHGGFEITTSESTTPAILDVSVTTHTTSTSVFRNPS FADPSVVQSQPAVEAGGHILISTSTISSHPVEEIPLDTFIVSSSDSNPASSTPIPASG ARPRIGLYSKALHQVQVTDPAFLSSPQRLITFDNPAYEGEDVSLEFAHNTIHQPPDDA FMDIIRLHRPAIQSRRGRVRFSRIGQRGSMYTRSGKHIGGRIHFYQDISPISAAAEEI ELHPLVATAHDTSLFDIYAEPDPDFTEEPVPLSFSTSTPFQRSSVSATPWGNTTVPLS LPGDMFVQPGPDIIFPTASTTTPYSPVTPALPTGPVFISGATFYLYPAWYFARKRRKR VSLFFADVAA" CDS 5694..7199 /note="ORF L1 from bp 5616 to 7199" /product="major capsid protein" /gene="L1" /note="putative" /codon_start=1 /translation="MWRPSENQVYVPPPAPVSKVITTDAYVKRTNIVYHASSSRLLAV GNPYFAIRPANKTLVPKVSGFQYRVFKVVLPDPNKFALPDTSIYDPTTQRLVWACIGL EVGRGQPLGVGISGHPLLNKLDDVENSASYAASPGQDNRVNVAMDYKQTQLCLVGCAP PLGEHWGKGKPCNNGSVNSGDCPPLELITSVIEDGDMVDTGFGAMNFAELQPNKSDVP LDICTATCKYPDYLQMAADPYGDRLFFYLRKEQMFARHFFNRAGTVGEDIPQDLVFKG ATKSTVPNAIYFNTPSGSLVSSETQLFNKPFWLQRAQGHNNGICWGNQLFVTVVDTTR STNMTICAATTQSPSTTYNSTEYKQYMRHVEEFDLQFMFQLCSITLTAEVMAYLHTMN PGILEQWNFGLSPPPNGTLEDKYRYVQSQAITCQKPPPEKAKQDPYAKLSFWEVDLRE KFSSELDQYPLGRKFLLQTGVQARSSVRVGRKRPASAATSSSSKPKRSRKK" BASE COUNT 2400 a 1526 c 1658 g 2238 t ORIGIN 1 taataataat gtaagcttta gaaaagagga gggaccgaat tcggttccaa ccgaaaacgg 61 ttatataaaa accagcccaa aaattaagca agcggggcat aatggaaagt gcaaatgcct 121 ccacggctgc acaaagtata gaccagttgt gcaaggagtg caacattcct atgcaccatt 181 tgcaaatttt atgcgtgttt tgcagaaaaa ccttgaccac tgcagaggtt tattcattcg 241 catataaaca gttatatgta gtgtttcgag gtaactttcc atttgcagcc tgtgccattt 301 gtttagaact acaaggtaag gtcaatcaat ttaggcattt tgacttcgcg ggatatgcat 361 taacagtgga agaagagaca aagcagtcaa ttttggacgt gttcatacgc tgttatttgt 421 gccacaaacc attgtgccac gtggaaaagg tgcgccacat attggagaag gcgcgattta 481 ttaaattaca gaatacctgg aagggtcgct gcttccattg ctggacatca tgcatggaaa 541 ctatcctacc ttgaaggaaa ttgttttaga gctggatcct cctgaccctg taggcctaca 601 ttgcaatgag caattagaca gctcagagga tgaggtggat gaactagcca cgcaggccac 661 gcaagacgtt acacagcctt accaaatagt aaccacctgt ggtacatgta accggaacgt 721 tcggctggtt gtgcagtgca caggaacaga catctgtcaa ctacatacgc ttctgctggg 781 ttcactggaa atactgtgtc ctgtgtgtgc gcccaaaaac taacaacgat ggcagacaat 841 acaggtacag aggggacggg gtgctcagga tggttcttag tagaggctat agtggagaaa 901 acaactgggc aacaaatatc tgaggatgag gatgaggcag tggacgatag tgggttggat 961 atggtggact ttatagatga caggcctatt acacacaatt ccatggaagc acaggcattg 1021 ttaaacgagc aggaggcgga tgctcattat gcggctgtgc aggacctaaa acgaaagtat 1081 ttaggtagtc catatgtgag tcctttaagc aatattaagg aggcagtgga gtgtgacatt 1141 agcccacggt tggatgccat aaaattaagt agacaaccca aaaaggtaaa gcggcggctg 1201 tttgaaagac cagaattaac ggacagtgga tatggcaata ttgatgtgga agctgaaacg 1261 caggtagaga gaaatggcga accggaagat tgtgggggag gtggacaagg aagggacaca 1321 gaggaggggg tggaacaggt ggaaacggaa gtgcagacac atagcgacac acagctgcac 1381 accgagacca cgcgggtagt agaactgtta aaatgtaaga atatacgggc tacactgctt 1441 ggtaagttta aggactgtta tgggttatca tatacagatt taattagaca atttaaaagt 1501 gacaagacaa catgtgggga ctgggtgatt gcagcatttg gggtgcacca tagtgtatcg 1561 gaggcgtttc aaaatttaat acaaccagta acaacatata gccacataca atggcttaca 1621 aatgcatggg gaatggtatt actggcatta ttacggttta aggtaaataa aaacagatgt 1681 acagtggcac gcatgatggc aacacgttta aatatacctg aggatcatat gttaattgaa 1741 cctcctaaaa tacaaagcgg tgttgcagca ttatattggt ttagaagtag tatatccaat 1801 gccagtatag ttactggaga aacgcctgaa tggataacaa ggcaaaccat tgtagaacat 1861 gggcttggtg acaaccaatt caaattaaca gaaatggtgc aatgggcata tgataatgac 1921 ttttgtgagg aaagtgaaat tgcatttgaa tatgcacaac gtgcagatat agatgcaaat 1981 gcaagagcat ttttaaatag taattgtcag gcaaaatatg taaaagattg tgctacaatg 2041 tgcaagcact ataaaactgc agaaatgaaa aaaatgagta tgaaacagtg gataaaattt 2101 aggagcagta aatatgaaga aacaggcaat tggaaaccaa tagttcaatt tttaagatat 2161 caaaatattg aattcattcc atttttaact aaattgaaaa tgtggctgca tgggacacct 2221 aaaaaaaact gtattgcaat tgtaggacca ccagacacag ggaaatcgtg tttctgtatg 2281 agtttaatta aatttttagg aggcactgta attagttatg taaactctag tagtcacttt 2341 tggctacagc ccctatgcaa tgcaaaagta gcattgttag acgatgtaac acaatcgtgc 2401 tgggtatata tggatacata catgagaaac ctattagatg gaaaccctat gactattgac 2461 agaaaacaca aatcattagc attaataaaa tgtccgccat taatagtaac atctaacata 2521 gacattacta aagaagataa atataaatat ttatgtagca gggtaacatt atttacattt 2581 ccaaatccat tcccctttga cagaaatggg aatgcactat atgacctgtg tgaatcaaac 2641 tggaaatgtt tctttgcaag attatcaaca agtctagata tacaaacatc tgaggacgag 2701 gacgatggag acaatagcca agcatttaga tgtgtgccag gaacagttgt tagaactgta 2761 tgaagaaaat agtaataacc ttacaaaaca tatacaacat tggaaatgca taagatatga 2821 atgtgtgtta ttacacaaag caaagcaaat gggcctaaac cacattggaa tgcaagtggt 2881 gccagcatta acagtgtcac agacaaaggg acaccaggcc attgaaatgc aaatgacatt 2941 agaaacacta ttaaactctg actatggtat ggaaccatgg acattgcaag acacaagtcg 3001 tgaaatgtgg ttaacagcac ccaaatactg ttttaaaaaa cagggacaaa ctgtggaagt 3061 aaaatatgac tgcaatgcag acaacattat ggagtatgta tcgtggaaat atatttatgt 3121 gcatgacaca gacaaatggg taaaagtgac aggacacata gactataaag ggttgtatta 3181 tgtacatggc gggcataaaa cctattatac caattttgaa aaagaggcta aaaaatatgg 3241 gaactcatta caatgggagg tctgtattgg tagcagtgtc atatgttctc ctgcatctat 3301 atctagtact gtgcaagacg tatccattgc tgggcctgct tcacacacct cctcctccac 3361 caccaccacc cttgcacagg cctcacctgc actgcccacc tgcacctccg aggaacgcgt 3421 ggacccgccg ccatgtaaac gaccccgagg acccaccaca aacaccaaca acgccaggga 3481 caccgtcagt gtccgacaca gcgactccgt ggacagtaca aacaacaaca tctaccctaa 3541 cagttacaac agtaacaaag gacgggacaa caatttttgt acagctacgc ctgtagttca 3601 attacaaggt gatcctaatt gtttaaagtg tttaagatat agattacatg caaagcataa 3661 aacattgttt gtagcagcat cgtccacatg gcgctggaca tgttcagata cttccagtaa 3721 acatgcactg gtaacattaa catatgttaa tgaagagcaa cgtgagcagt ttttaaacac 3781 tgtacggtta cctccaacag ttacatataa agttggatat atgtctttac aattgttata 3841 atgcttattg tatatattta attgtataaa ttgtacatgg aacatatacc tatagatggt 3901 actatagggg caaccagcac atcattactg ccagttgtac ttgccctgtt tgtatgtttt 3961 gttagcattg tattaattat ttacatttct gattttatag tgtacacatc tatattggta 4021 ctaaccttac tgctatatat gttactttgg cttttactaa ccactgccct gcaattttat 4081 gtactaacac tgtgtgtctg cttttttcct gcgtggtatc tacatttcta tattgtacat 4141 acacaagaat aactattaca atgctaacat gtacctttga tgatggtgat acatggttgt 4201 tattatggtt tatattaacc ttaattgtta ccattgtggc attgttatta atgcacttta 4261 aatctgtacc atgtgttaca tgcagtaaat aagtgtttgt aaacgtggtg tggttggtat 4321 aattatggca cacagcaggg cacgtagacg taaacgtgcc tcagctaccc aattatatca 4381 aacctgtaag gctgcaggca cctgtccatc tgatattatt cctaaagttg aacataacac 4441 tattgctgat caaatattaa agtggggcag tttgggtgtt ttttttggag gactgggaat 4501 tggtacaggc tctggcacag gtggtcgaac aggatatatt cctttgcaat ctaccccacg 4561 tcctgagatt ccctctggcc ctaccacaag gccacctata cttgttgata cagttgcacc 4621 tggtgacccc tctattgttt ctttggttga agaatctgct attataaatt caggagctcc 4681 ggaattggtc cctccgtccc atggtggctt tgagattact acatcagaat ccaccacacc 4741 agccatatta gatgtgtctg ttacaacaca tactacctct acaagtgtat ttagaaaccc 4801 tagctttgca gacccatctg ttgtacagtc ccagccagcc gttgaagctg gtggacacat 4861 acttatctct acctcaacca tatcgtccca ccctgtagag gaaataccat tagatacatt 4921 tatagtatct tcttcagata gtaatcctgc atctagcact cccattccag catctggtgc 4981 acgaccacgt attggcctat acagtaaggc tttacaccag gtacaggtaa cggatcccgc 5041 ctttttgtcc tctccccaac gccttataac atttgataat cctgcatatg aaggggaaga 5101 tgttagtttg gagtttgcac acaatactat acatcagcct ccagatgatg cgtttatgga 5161 tattatacga ttgcacagac cagctataca atctcggcgt ggtcgtgtgc ggtttagtag 5221 aataggacaa cgggggtcta tgtacacacg tagtggtaaa catattggtg gcaggataca 5281 tttctatcaa gacatatctc ctatatctgc tgctgcagaa gaaatagaac tgcaccctct 5341 tgtggccact gcacacgata ctagcctgtt tgatatttat gcagaacctg accctgactt 5401 tacagaagaa cctgttccat tgtctttttc cacctccacg ccctttcagc ggtcttctgt 5461 gtcagccacc ccatggggca atactactgt ccctctttca ttacctggtg acatgtttgt 5521 acagcctggt cctgacataa tatttcctac tgcatccact acaactccct atagtcctgt 5581 cactcctgct ttacctacag gtcctgtttt tataagtggt gctacatttt atttatatcc 5641 tgcatggtat tttgcacgca aacgccgtaa acgtgtttcc ttgttttttg cagatgtggc 5701 ggcctagtga aaaccaggta tatgtgcctc ctcccgcccc agtatccaaa gtaataacta 5761 cggatgccta tgtcaaacgc accaacatag tttaccatgc tagcagttct agacttcttg 5821 ctgtaggcaa cccttatttt gccatacgac cagcaaacaa gacacttgtg cctaaagttt 5881 caggatttca atatagggtt tttaaggtgg tattgccaga ccctaataaa tttgcattac 5941 ctgacacatc tatatatgac cctactacgc aacgcctggt atgggcctgc attgggttgg 6001 aagtgggtag aggccagccc ctgggtgttg gtattagtgg gcatccatta ttaaacaaat 6061 tggatgatgt ggaaaattct gctagttatg cagccagtcc aggtcaggac aacagggtaa 6121 atgtggccat ggactataaa caaacacaat tatgtttagt tggctgtgca cccccattgg 6181 gggagcattg gggtaagggc aagccatgta ataatggtag tgtaaatagc ggagactgcc 6241 ctcccctgga attaattact agtgttatcg aagatggtga tatggtggac actggttttg 6301 gagccatgaa tttcgctgaa ttgcaaccaa ataaatctga tgttccctta gatatatgca 6361 ctgctacatg caaatatcct gactatttac aaatggctgc tgatccatat ggggacagat 6421 tgttttttta cttacgaaag gaacaaatgt ttgcaagaca tttttttaat agggcgggaa 6481 cggttggaga ggacattcca caggatttgg tttttaaagg tgctactaaa agtacagttc 6541 ctaatgccat atactttaat acacccagtg ggtctcttgt atcttctgaa acccaattat 6601 ttaataagcc tttttggttg caaagggcgc agggccacaa taatggtatt tgttggggga 6661 atcagttatt tgttactgtt gtagatacta cacgtagtac aaacatgaca atatgtgctg 6721 ctacaactca gtctccatct acaacatata atagtacaga atataaacaa tacatgcgac 6781 atgttgagga gtttgactta cagtttatgt ttcaattatg tagtattacc ttaactgctg 6841 aggtaatggc ctatttacat accatgaatc ctggtatttt ggaacagtgg aactttgggt 6901 tgtcgccacc cccaaatggt accttagaag acaaatacag atatgtgcag tcacaggcca 6961 ttacatgtca aaagcctccc cctgaaaagg caaagcagga cccctatgca aaattaagtt 7021 tttgggaggt agatctcaga gaaaagtttt ctagtgagtt agatcaatat ccccttggta 7081 ggaaattttt attgcaaacg ggtgtgcagg cccggtcctc tgttcgtgtg ggtagaaaac 7141 gtcctgcatc tgcagccact tcatcctcca gtaaacccaa acggtctagg aagaagtagt 7201 atgtgttatt gttttgtttg tgtatgtgtg tcatatgtta ttgtttgtta tatgtgttgt 7261 attgtatata tgttgtatgt ctatgttgtg taatgttgta tgtatgcatg tgtgtgttgt 7321 atttaataaa cttaatctgt gtgtcctgtt ccaccccatg agtaagtgtt gtagtattgt 7381 gtgttatgtc tggtgtatac aatatacaac atatgtacag ccatgttgtt ttataaaaca 7441 catttttaaa catattcctc cattttgggt gcaaccgttt tcggttgtta ctcatcaccc 7501 acatcctgta accaatttgt tgtagcaagc aaaatattta atcttatcta tagttgccaa 7561 aactttacta tgttactaag tacacacctg gcgcacagct aggcgcggtt tggcaactac 7621 acaatacatt cctaatctat ataacactgc tgtctacttg tttaacaatc gtgtgctggt 7681 agccaacttt taaaagcatt tttggctact aacactacat ttttgtacag ttactgttag 7741 ttttataaaa tgagtaacct aaggtcacac acctgcaacc ggtatcggtt gaaacacacc 7801 ctgtacattt ccttattata gt