LOCUS HPV54 7759 bp ds-DNA VRL 04-SEP-1995 DEFINITION Human papillomavirus type 54. ACCESSION L00000 SOURCE Human papillomavirus DNA. ORGANISM Human papillomavirus Viridae; ds-DNA non-enveloped viruses; Papovaviridae; Papillomavirus REFERENCE 1 (bases 1 to 7759) AUTHORS Delius,H. TITLE Direct Submission JOURNAL Unpublished (1995) COMMENT HPV-54 was first isolated from a patient with condyloma acuminata. FEATURES Location/Qualifiers source 1..7759 /organism="Human papillomavirus type 54" CDS 102..536 /note="putative" /note="ORF E6 from bp 7708 to 536" /product="transforming protein" /gene="E6" /note="putative" /codon_start=1 /translation="MSATEPHTDQPRTLADLCKVCNIPMHSLQLPCAFCKKTVCTAEI YAFQYKDLFVVWRHGFPHAACALCLELHGQINYRRHRDRACLWETVEQECGKPLEEIF IRCWLCHKPLCNVEKQRHVDYNRRFHCVRGYWKGRCLHCWKP" CDS 536..823 /note="putative" /note="ORF E7 from bp 512 to 823" /product="transforming protein" /gene="E7" /note="putative" /codon_start=1 /translation="MHGNVATIEDIVLDLKPEPFDLYCREQLEDSDAEDETAVTQPDK QAFKVLSQCGGVCCKTVRLCVYSTHTGIRVLQELLHQDALQIVCPTCASRL" CDS 828..2729 /note="putative" /note="ORF E1 from bp 795 to 2729" /product="replication protein" /gene="E1" /note="putative" /codon_start=1 /translation="MADNQGTEEEGTGCNGWFFVEAIVERKTGDIISDDEPEDVEDSG LDMVDFIDNSVSQVEGQENPQALLHAQQLQADVEAVQQLKRKYIGSPYVSPVANSEPC VEKDLSPRLGAISLGRRSAKAKRRLFDKAQPPPNGHTDVEAAVEVNTEGTDETETDQV QTVSGETTTDSLGRQQITELIHNTNIRVALFGMFKDLYGLSFMDLARPFKSDKTVCTD WVIAAFGIYHGITDGFKTLLEPHCLYGHIQWLTCRWGMVLLLLTRFKCGKNRLTVSKC LGMLLNIPETQMLIDPPKLRTPAAALYWYRQGLSNASEIFGTPPEWLARQTVIEYSLA DSQFDLSKMVQWAYDHNYIDDSIIALEYAKLADIDENAAAFLGSNCQAKYVKDCGTMC RHYIRAQKMQMTMSQWIKHRCDLVEEEGEWKEIVRFLRYQHVDFISFMIALKQFLQGI PKHNCILLYGPPDTGKSNFAMSLISFLGGVVLSYVNSSSHFWLEPLADAKIAMLDDAT TQCWNYMDIYMRNALDGNPMCFDRKHRAMVQTKCPPLIVTSNINASTDDRWRYLHSRV KCFCFPNRFPFDSNGNPVYDLSNKNWKSFFKRSWSRLALNDNDNEEEENGDPSNTFRC VPGKASRPI" CDS 2671..3774 /note="putative" /note="ORF E2 from bp 2644 to 3774" /product="regulatory protein" /gene="E2" /note="putative" /codon_start=1 /translation="METLATRLDVCQERLLDLYEKDSNKLEDQIEHWKCIRLECALQY KAREMGYKVLQHQALPALAVSKGKGHKAIELQLALETLQKTVYSTEPWTLQDTCLERW NAPPTGCLKRRGQTVDVIFDGHQDNTMQYVMWGDIYYQNCDGEGWTKVCSNIDAMGIY YMDAEHKVYYVDFKKEASKYGEYGQWEVRMGSSIIFSPASVSSTEEALSISSTGTAEH TRPANSTPRTDNSTKAIPCTPPPRKRARVYSTDQQPHSTSDPVGCDNDRHISDDNNKN QGRHTSSGDTTPIVHFKGEPNTLKCFRQRIQKYKHLFEQASSTWHWACVPGTTKNRGI VTLTYSSVEQRQQFLVTVRIPPSISMSLGVMSL" CDS 3134..3538 /note="putative" /note="ORF E4 from bp 3134 to 3538" /gene="E4" /note="putative" /codon_start=1 /translation="MQWVFIIWMQNTKCIMWILKRKHLSMGNMDSGRCVWAAASFFLL HLYLVPKRHCQYPLLALLNTPDQPIPHHVPTTPQKQSRARRRLENELESTAQTSNHTA PQTPWAVTTTGTSVTITTRTKDGTQVVVTLHL" CDS 4215..5627 /note="putative" /note="ORF L2 from bp 4200 to 5627" /product="minor capsid protein" /gene="L2" /note="putative" /codon_start=1 /translation="MAKARAPRRKRASATQLYQTCKASGTCPSDVIPKVEGTTIADQI LRWGSMGVFFGGLGIGTGSGTGGRTGYIPLGRPSTTLEPGPPVRPAGAVETVAPSDPS IVSLVEESSVVDVGAPTPTIPSQGGFEIATSSDATPAILDVTSTTTPIRVSITSHDNP IYTEPSLLDPPPPVQMDGRVLVSTSTLQSSTAENIPMDTFIIMQDHIGTTTSTPIPRP PARPRLGLYSRALQQVPVQDPAFLQQPSSLITYDNPVYEGNPDVTLHFEQPTIHNAPD PAFMDIFALHRPALTTRRGVVRYSRVGDRATLHTRSGLQLKPRVHFFQDLSPIAHVPE EIELHPLISANNTSINNGLYSDIYDVYADTDFADTGGFSSSTVSHSSVQTALQTTSIP SQYGNTTVPLTASSPYTPIPTSFRPSSGHTPFVPARPIFPQTPIAVNGGDFYLHPSYT YVRKRRKRFPYFLADGYVAA" CDS 5614..7107 /note="putative" /note="ORF L1 from bp 5422 to 7107" /product="major capsid protein" /gene="L1" /note="putative" /codon_start=1 /translation="MWRPSENKVYLPPTPVSKVVSTDEYVTRTSIYYHASSSRLLAVG HPYFKVQKTNNKQSIPKVSGYQYRVFRVQLPDPNKFGLPDPSLYNPETQRLVWACTGV EVGRGQPLGLGLSGHPLLNKLDDTENAPKYVGAGADNRENVSMDYKQTQLCILGCTPP IGEHWAKGNLCTPNTLAAGDCPPLELVNSYIQDGDMVDIGFGAMDFKTLQTSKSEVPL DVATSICKYPDYLKMAAEAYGDSLFFYLRREQMFVRHMLNRAGTMGEPVPNDLYIKKS SGNLDSSIYAATPSGSMVTSEYQIFNKPYWLQRAQGQNNGICWGNQVFLTVVDTTRST NLTLCATASTQDSFNNSDFREYIRHVEEYDLQFIFQLCTITLTADVMAYIHGMNPTIL EDWNFGITPPATSSLEDTYRFVQSQAIACQKNNAPAKEKEDPYSKFNFWTVDLKERFS SDLDQFPLGRKFLLQAGLRARPRLRPVKRAAPSSSKGTARKRAKTKR" BASE COUNT 2326 a 1530 c 1718 g 2185 t ORIGIN 1 taactacaac catgatttat aaaataaggg agggaccgaa aacggttcaa ccgaaaccgg 61 tacatataaa agcggttgta gaaaacagtt atttgggggc aatgtctgct actgaacccc 121 acacggacca gccgcgtact ctagctgatt tgtgcaaggt atgcaatatt cctatgcata 181 gtttgcaact tccttgtgcc ttttgcaaga agacggtgtg tacagcagag atttatgcat 241 ttcaatataa ggacctattt gtggtgtgga gacacggctt tccacatgct gcatgtgcac 301 tgtgcctaga actgcacggg caaataaatt atagaaggca tcgcgaccgt gcgtgcctgt 361 gggaaacagt ggaacaagag tgtggaaagc cattggaaga aatatttata aggtgctggc 421 tgtgccataa acctttgtgc aacgtggaaa agcaacggca cgtagattac aacaggcgat 481 tccactgtgt tagaggctat tggaagggta ggtgtctaca ttgctggaag ccataatgca 541 tggaaatgtg gctacaattg aggatatagt ccttgattta aaaccagaac cgtttgacct 601 gtactgcagg gagcaattag aagactctga tgcagaagat gagacagcag taacacaacc 661 tgacaaacaa gcatttaagg tgttaagcca gtgtggaggt gtgtgttgta agacagtacg 721 gctatgtgtg tatagcacgc acacaggcat aagggtactg caggaactgc ttcatcagga 781 cgcactgcaa atagtgtgtc ccacctgtgc ttcacgacta taacggcatg gcggataacc 841 aaggtacaga ggaggagggg actgggtgta atggatggtt ttttgtggaa gcaattgtag 901 aacgtaaaac aggggatatt atttcagatg atgagcctga ggatgtggag gacagtgggc 961 ttgatatggt ggactttatt gataatagtg tgtcacaggt agaggggcag gaaaatccac 1021 aggcattgtt acatgcccaa cagctgcagg cagatgtaga ggcagtgcaa caattaaaac 1081 gaaagtatat aggcagtccg tatgtaagtc ctgttgcaaa cagcgaaccc tgtgtagaaa 1141 aggacctaag cccccggcta ggggctatat ccctaggacg gcggtcagcc aaagccaaac 1201 gacggctgtt tgataaggcc caaccgccgc caaatggcca tactgacgtg gaagctgcgg 1261 tggaggtaaa taccgagggg acagatgaaa cagagacaga ccaggtgcag acagtatctg 1321 gggaaacaac tacagatagc ctaggaaggc agcaaattac agaattaata cataacacaa 1381 atattcgtgt agcattgttt ggtatgttta aagacctata tggattaagt tttatggacc 1441 tagcacggcc atttaaaagt gacaaaacag tgtgtaccga ttgggttatt gcagcatttg 1501 gaatatatca tggtattaca gatggattta aaacattgct agagccacat tgtttgtatg 1561 gccatatcca atggctaaca tgtaggtggg gcatggtatt attattatta acaagattta 1621 aatgtggcaa aaacagatta acagtaagta aatgtttagg aatgttatta aatataccag 1681 aaacccaaat gttaatagat cctccaaaat tacggacgcc tgcagcagct ttgtattggt 1741 atagacaggg gctgtccaat gcaagtgaaa tatttggtac acccccggaa tggctggcca 1801 gacaaactgt aattgaatat agcttagcag acagccagtt tgatttatct aaaatggtac 1861 aatgggcata tgaccataat tatattgatg acagtattat tgccctggaa tatgctaaat 1921 tagctgatat agatgaaaat gcggctgcct ttctaggaag taattgtcaa gctaagtatg 1981 taaaagactg tggaacaatg tgtagacatt atataagggc acaaaaaatg caaatgacaa 2041 tgtcacaatg gattaaacat cgttgtgatt tagtagagga ggaaggtgag tggaaggaaa 2101 tagtacgatt ccttagatat caacatgtgg attttatatc ttttatgata gcattaaaac 2161 aatttttaca aggcatacca aaacacaatt gtatattact gtatggacct ccagacacag 2221 gaaaatctaa ttttgccatg agtttaatta gctttttagg aggtgtagtg ctatcatatg 2281 ttaattctag tagccatttt tggttagaac ctttggcaga tgccaaaata gctatgctag 2341 acgatgctac aacacaatgc tggaactata tggacattta tatgcgcaat gcattagatg 2401 gcaatcctat gtgctttgat agaaaacatc gagctatggt gcaaacaaaa tgtcctccac 2461 taatagtgac ctccaacata aatgctagta cagacgacag atggcgctac ctacacagta 2521 gagtaaaatg tttttgtttt cccaatagat ttccatttga tagtaatgga aaccctgtgt 2581 atgatttaag taataaaaat tggaaatcat tctttaaaag gtcatggtca cgtttagcgc 2641 tgaacgacaa cgataacgag gaggaggaga atggagaccc tagcaacacg tttagatgtg 2701 tgccaggaaa ggcttctaga cctatatgaa aaagatagta ataaactaga ggaccaaata 2761 gaacattgga aatgcatacg cctggagtgt gcattgcaat acaaagcccg ggaaatggga 2821 tacaaagtgt tacagcacca ggcactgcct gcacttgctg tgtcaaaggg caaagggcac 2881 aaggccattg aactgcaact tgcattagag acattgcaaa agacagtata cagcaccgaa 2941 ccgtggacat tacaggacac atgcctggaa cggtggaatg caccaccaac tggttgctta 3001 aaaagacgtg gacaaacagt agatgttata tttgatgggc atcaggataa cacaatgcaa 3061 tatgtaatgt ggggagatat ttattatcaa aactgtgatg gggagggatg gactaaggtg 3121 tgcagtaata tagatgcaat gggtatttat tatatggatg cagaacacaa agtgtattat 3181 gtggatttta aaaaggaagc atctaagtat ggggaatatg gacagtggga ggtgcgtatg 3241 ggcagcagca tcattttttc tcctgcatct gtatctagta ccgaagaggc attgtcaata 3301 tcctctactg gcactgctga acacaccaga ccagccaatt ccacaccacg taccgacaac 3361 tccacaaaag caatcccgtg cacgccgccg cctagaaaac gagctagagt ctacagcaca 3421 gaccagcaac cacacagcac ctcagacccc gtgggctgtg acaacgacag gcacatcagt 3481 gacgataaca acaagaacca aggacggcac acaagtagtg gtgacactac acctatagtg 3541 cactttaaag gtgaacctaa tacattaaaa tgttttaggc aaagaataca aaagtataaa 3601 catttgtttg aacaagcatc ctcaacatgg cattgggcat gtgtaccagg taccactaag 3661 aataggggca ttgtaacatt aacctatagt agtgtagaac aaaggcaaca atttttagta 3721 actgttcgca ttccacctag tatatctatg tcattagggg taatgtcatt ataacagata 3781 atcattgtaa agtttgtgat tgtacatact atattgtaaa acaaccagcc aatactgctg 3841 ctatgtgtat atagtgaggt atgtatggtg agtatggtag tgagtgcatg caggcctgca 3901 gtgactgagg tgaggtgtgt gtgtaggtgt gtgtagtgta tgcagtaata atgttgtata 3961 cagtaagttg gttaacatgt tggtttttat tatccatgtt attatggcaa tgtattacaa 4021 cagcatttac tttttttctt gtagccttta ttctattgtg ggtacctgcc ctgtgtgttt 4081 atgtgcgcct tgccaggctt cttgaacttg accttcactt tacataaggt gttactgtgc 4141 acacctactg tggatgccct gtgtaacctg cttaccatag tataataaat attgtgtaga 4201 tatatttgtg tattatggct aaagcaagag ccccacgccg gaaacgtgca tctgcaacac 4261 aattatatca aacatgcaag gcctctggca catgcccttc agatgtaatt cctaaggtag 4321 agggtacaac tatagcagat caaatcctac gatggggcag tatgggcgtg ttttttgggg 4381 gcttgggaat aggtactggt agtggcacag ggggccgcac agggtatata ccacttggac 4441 gaccctctac tacccttgaa ccaggtcctc ctgtacgtcc cgcaggggct gtagaaacag 4501 tagcaccctc tgacccttcc attgtgtctt tagtagagga atctagtgtt gtggatgttg 4561 gggcaccaac ccctaccatt ccatcacagg gtgggtttga aatagccaca tctagtgatg 4621 ctacccctgc tatattagat gtcacctcca ctaccacccc tattagggtg tctataacat 4681 cccatgataa tcctatatat acagagccat cattattaga ccccccccct ccagtacaaa 4741 tggatggtcg tgttttagta tctacctcta ctttgcaatc gtccactgct gaaaatatac 4801 ctatggacac ttttataatt atgcaggacc atataggcac aacaactagc acacctatac 4861 caaggccgcc tgcacgccca cgcttaggtt tatattcccg tgcgttacag caagtgcctg 4921 tacaggaccc tgccttttta caacagcctt ccagtcttat aacatatgac aatcctgtat 4981 atgagggtaa cccagatgtt accctacact ttgagcagcc cacaatacat aatgcacctg 5041 atcccgcctt tatggacata tttgctttac atagaccagc acttacaact cgtagggggg 5101 ttgtacgtta tagtagggtg ggcgacaggg ccacattaca cacacgtagt ggcctgcaac 5161 ttaaacctcg tgtgcatttt tttcaggact taagccctat tgctcatgtc cctgaggaaa 5221 tagaattaca ccctttaata tctgcaaaca atacaagcat taacaatggt ctttactcag 5281 atatatatga tgtatatgct gacacagatt ttgctgacac tggtggtttt tcctcttcta 5341 ctgtttcaca tagttctgta caaacagccc tacaaactac atctatacca tctcagtatg 5401 gtaacaccac agttccccta actgcctcat cgccatatac acctataccc acatccttta 5461 ggccctcatc aggtcacacc ccatttgttc ccgcacgtcc tatatttcca caaacaccca 5521 ttgctgttaa tggtggggat ttttacctgc atcctagtta tacttatgta cgcaaacgcc 5581 gtaaacgttt cccatatttt cttgcagatg gctatgtggc ggcctagcga aaacaaagta 5641 tacctgcctc ctaccccagt ttctaaggtt gtcagcacgg atgaatatgt gactcgcaca 5701 agcatatact atcatgcaag cagctctaga ttattggctg ttggacatcc atattttaaa 5761 gtacaaaaaa ccaataataa gcaaagtatt cctaaagtat caggatatca atatagggtg 5821 tttagggtgc aactacctga tcctaataag tttggactgc ctgatcctag tttatataat 5881 cctgagacac aacgcttagt atgggcatgc acaggtgtgg aggttggtag gggccagcca 5941 ttgggtcttg gcctaagtgg tcatccatta ttaaataaat tggatgatac tgaaaatgca 6001 cctaaatatg ttggtgcagg agctgacaat agggaaaatg ttagcatgga ctataaacaa 6061 acacagttat gtattttggg ctgcacacca cctataggtg aacactgggc taaaggcaac 6121 ctatgtacac ctaatacatt ggctgctggt gactgtcctc ctttggaatt agtaaattca 6181 tatatacagg atggtgatat ggtagatata ggatttgggg ctatggattt taaaacccta 6241 caaacctcaa aaagtgaggt accccttgat gtagctacct caatttgtaa atatcctgat 6301 taccttaaaa tggctgcaga ggcatatggg gacagtttat ttttttactt aaggcgggaa 6361 caaatgtttg ttaggcatat gttaaatagg gcaggtacca tgggtgagcc tgtacctaat 6421 gacttataca ttaagaaatc ctcaggtaac cttgacagtt ctatttatgc tgcaactcct 6481 agtggctcta tggtaacatc tgaataccaa atatttaata agccatactg gttacaacgg 6541 gcccagggtc aaaacaatgg tatttgttgg ggcaatcagg tgtttttaac agttgtagat 6601 accacccgta gtactaacct aacattgtgt gctacagcat ccacgcagga tagctttaat 6661 aattctgact ttagggagta tattagacat gtggaggaat atgatttaca gtttatattt 6721 cagttatgta ccataaccct tacagcagat gttatggcct atattcatgg aatgaatccc 6781 actattctag aggactggaa ctttggtata acccccccag ctacaagtag tttggaggac 6841 acatataggt ttgtacagtc acaggccatt gcatgtcaaa agaataatgc ccctgcaaag 6901 gaaaaggagg atccttacag taaatttaat ttttggactg ttgaccttaa ggaacgattt 6961 tcatctgacc ttgaccagtt tcccttgggt cgcaagtttt tactacaggc tggcctacgt 7021 gcacgtccgc gccttcggcc tgtaaagcgt gcagcccctt cctcctctaa gggtacagcg 7081 cgcaagcgtg ctaaaactaa aaggtaacag tgttgtatgt tgtgttgtta tgtgttgttg 7141 tgtttgtacc ttgtctgtgt gtatgttgtg tatgtattat gttatgtgtg gaatgtttgt 7201 gtgtcctatt tatgttgtga ctcgtatgtt atatatgttg tatgttttcc tgtattatat 7261 ataataaaga ctttggttgc accctatgag taacttttgt gtgatgttgt ttgctacgtg 7321 cttagtagcc tttacctttt cacctttggt gtccattttg tataatctcc attttatata 7381 accgaaaccg ttttcggttg ctgttggcac taaaactgtg ttttaagcac tttgtatcgt 7441 acatctaatc ttttgggcgc cgccacatcc tgccctggta gttttgccag cacatctgca 7501 cacccacaca tttataactg tcagaacaac ttcactttcc attgtgtaaa aacacgccct 7561 ttgcattcca acattgattt atatattttt tacataataa aacatgctag taggcacata 7621 ttttagctgt gtaaacttag taagtgcata gttggcaaac taaaacatag gtgtatgcca 7681 ggtacgtgtc tgtacaacag tgactaattc aggaaaccga tttcggttgc tcacccatta 7741 tcttttttat cattattat