LOCUS HPV24 7452 bp ds-DNA VRL 04-JUL-1995 DEFINITION Human papillomavirus type 24 (HPV24), complete genome. ACCESSION U31782 SOURCE Human papillomavirus type 24 DNA. ORGANISM Human papillomavirus type 24 Viridae; ds-DNA nonenveloped viruses; Papovaviridae; Papillomavirus. REFERENCE 1 (bases 1 to 7452) AUTHORS Delius,H. TITLE Direct Submission JOURNAL Unpublished REFERENCE 2 AUTHORS Kremsdorf,D., Favre,M., Jablonska,S., Obalek,S., Rueda,L.A., Lutzner,M.A., Blanchet-Bardon,C., Van Voorst Vader,P.C., and Orth,G. TITLE Molecular cloning and characterization of the genomes of nine newly recognized human papillomavirus types associated with epidermodysplasia verruciformis JOURNAL Journal of Virology 52(3), 1013-1018 (1984) COMMENT HPV24 was originally isolated from macules on the breast of a Dutch epidermodysplasia verruciformis (EV) patient [2]. Cloned HPV24 DNA was obtained from the Papillomavirus Reference Center, Heidelberg and subsequently sequenced by Dr. H. Delius. It hybridizes only weakly with other other EV-related HPVs [2]; phylogenetic analysis of DNA sequences indicates that HPV24 is clearly most closely related to EV-related types, but it is not closely related to any of the other EV-related subgroups. FEATURES Location/Qualifiers CDS 200..622 /note="ORF E6 from bp 176 to 622" /product="transforming protein" /gene="E6" /note="putative" /codon_start=1 /translation="MAQPGKPQSVLELSRLLNIPLDDCVVPCNFCKRFLSYTELTDFD TKCLSLIWKDDFVFACCRYCCVATAAFEFENYFVESVIGWEIEQKENTPLSDIIVRCH HCLKLLNQIEKLDICGRSELFHKVRRGWKGLCRQCKQI" CDS 622..912 /note="ORF E7 from bp 613 to 912" /product="transforming protein" /gene="E7" /note="putative" /codon_start=1 /translation="MIGKEVTLQDIVLELTEPQTVDLHCEEELPEQDTEVEPERRAYK IILCCGGGCGTRLRLFVAATQFGIRGLQDLLLEEVVILCPDCRNSDLQHGGQ" CDS 899..2722 /note="ORF E1 from bp 851 to 2722" /product="replication protein" /gene="E1" /note="putative" /codon_start=1 /translation="MADNKGSETDGLHEWCLLEADCSDIENDLDTLLEQNSDSDVSDL ISNDGDLEQGNSRELFQQQELEESNALLQSLKRKYISPKAVLQLSPQLESISLSSDHK TKRKLFAEQDSGVELTLTNETEDVTTLVQQEEEVPALETSSTSNLRKEDNAHYKELMR CSNLKATLLSKFKNAFGVSFVELTRQFRSNKTCCNDWVVAIYGVNYDLFESSKQLLQQ HCDYIWVTEMSAMFLYLLCFKAGKNRQTVIRLLVSMLYVAEEQILSEPPKLRSTVSAL FWYKGSSNAATFTHGSYPKWIIEQTLIGHQTGEAATFDMSTMVQWAFDNDLTEEADIA FQYAKLAPDDVNATAWLAHNNQARFVRECANMVRYYKKGQMREMSMSAWIHFKLEQVE GEGQWSTIVKFIRYQGINFISFLSALKDFLHGKPKKNCLLIYGPPNTGKSAFTMSLIK VLHGRVISFVNSKSHFWLQPMSEAKIALLDDATDPCWIYMDTYLRNGLDGHLVSLDCK HKAPIQIRFPPLLITSNINAMAEPNYRYLHSRLVAFEFPNPFPMKDDDTPEFELTDQS WKSFFKRLWRQLDLSDQEDEGEDGEPEKAFRCVARSTNEHL" CDS 2664..4067 /note="ORF E2 from bp 2634 to 4067" /product="regulatory protein" /gene="E2" /note="putative" /codon_start=1 /translation="MENLKKRFDVLQDLLMNIYEQGSDTLESQIEHWQALRREAVLLY YARQNGVLRLGYLPVPPLATSEAKAKQAISMVLQLQSLQQSPYGTEKWTLVDTSIETF KNTPENHFKKGPINVEVIYDGDPDNANLYTMWKYVYYMDDNDQWQKTESGANHTGIYY LIGEFKHYYVLFADDANRYSKSGQWEVRINKETVFAPVTSSTPPDSPGGSRELPGSTA NSKASSPTQQPQQACSDETTKRKRYGRRESSPTDSRCRRRSSSRQKKQGRRARSRTRS RCSSTQTRSRSTSRRSRSTSRGNRRCRGDTPRGQRGVSTSSRGRGRGSRRSSSSSSPT PRTKASQRGCDTRSVRDSGISPGDVGRKLQTVSGRNSGRLGRLLEEALDPPVILLRGG ANTLKCFRNRAKLRYRGHYKAFSTSWSWVAADGTERLGRSRLLVSFTSFKQRSGFLDL VRFPKGVDWSLGSFDKL" CDS <3151..3822 /note="ORF E4 from bp 3151 to 3822" /gene="E4" /note="putative" /codon_start=1 /translation="GSLNIIMCCLLMMPIDTVNLANGRSGLIRKLCLPLSPAPHHPTP QEGPENYPDPPLTPRPQAQPNSHNKPVVTKQPSGRGTGEGSQAPLTPDADDDPRPGKR SKGDEHGPAPGRAAAPLKLDLDPPQGGPDQPPGATGGVGETPPEGNEESQPPPGEGEG AVEGHPPPPPPPPEPKPHNGDATHGLLGTVASLLGTWEESFRQLVEEIQEDLDDYWRR LSIPQ" CDS 4132..5703 /note="ORF L2 from bp 4093 to 5703" /product="minor capsid protein" /gene="L2" /note="putative" /codon_start=1 /translation="MVRAKRTKRDSATNIYRTCKQAGTCPPDVINKVEQSTIADNILK YGSAGVFFGGLGISTGRGTGGTTGYVPLGEGTGVRVGSTPTVVRPALVPEVIGPADLL PVDTIAPVDPASSSIVPLTESSGVDLLPGEIETIAEVHPIPDVPTFDTPVVTTSKGSS AILEVAPEPTPPTRVRVSRTQYHNPAFHIITESTPSQGESSLSDEIIVASGAGGQSVG VSENIELQDLSNRYSFEIETPTPPRRSSTPLQRATQAFRQRSLTNRRLLQQVPVEDPL FLTQPSKLVRFAFENPAFEEEVTQVFEQDLAGFVEPPNRDFLDIAELGRPRFSETREG YVRLSRLGRRATIRTRAGTQIGAQVHFYKDLSSINTEAPIELDLLGQHSGDATIVHGT VESTFIDTNIEENPLAEQMELEIDTYPEAHSFDALLDEATDDFSGSQLVIGNRRSTTS YTVPRFESPRNSSYYVQDLQGYYVAYPESRDKIELIYPSPTLPAVVIHTEDSSGDFYL HPSLLQRRRRKRKYL" CDS 5713..7251 /note="ORF L1 from bp 5704 to 7251" /product="major capsid protein" /gene="L1" /note="putative" /codon_start=1 /translation="MSVWLPASGKVYLPPSTPVAKVQSTDEYIQRTNIFYHAYSDRLL TVGHPYFNVYNNDGTVLEVPKVSGNQHRVFRLKLPDPNRFALADMSVYNPEKERLVWG CRGVEIGRGQPLGVGTSGHPLFNKVNDTENPVSYRTQASSTDDRQNTSFDPKQIQMFI IGCAPCIGEHWEVAERCAGDNNDAGRCPPIKLVNSVIQDGDMADIGYGNLNFRTLQQS RSDVSLDIVNETCKYPDFLKMQNDVYGDSCFFFARREQCYARHFFVRGGKPGDDIPGE QIDAGTYKNDFYIPAATGQTQKNIGNSMYFPTVSGSLVSSDAQLFNRPFWLQRAQGHN NGICWANQLFITVVDNTRNTNFSISVYTENGKVTDINEYDANKFREYQRHVEEYEISL ILQLCKIPLKADVLAQINAMNPSLLEEWQLGFVPAPDNPLQSTYRYIESLATPCPDKV APKEREDPYAPYTFWNVDLSERLSLELDQYSLGRKFLFQAGLVQKTSKKTSNVSKGTK RKRT" source 1..7452 /organism="Human papillomavirus type 24" BASE COUNT 2385 a 1352 c 1629 g 2086 t ORIGIN 1 gcgccaagtt tcttggcact cgcacagcac cgttaacggt aagtgttttg tatactgtac 61 cgggcgcgat accaaatatg ccacctgcgc aattgttgtt agcaactact ttcattacct 121 aacaagtatt ttcatgcacc gtttccgtat cactgtgaat gtatttattg attagacata 181 taaaaaggaa gacatcttga tggctcaacc aggtaaacct cagtcagtgt tagaacttag 241 tagattatta aatataccat tagacgattg tgttgtacca tgtaactttt gcaaaagatt 301 tctaagttat acagagttaa ctgactttga caccaaatgc ttaagtttga tttggaaaga 361 cgattttgtg tttgcatgtt gtagatattg ttgtgttgct acagcagcat ttgaatttga 421 aaattatttt gtagagagtg tgataggttg ggaaatagaa caaaaagaaa atacacctct 481 ttcggacatt attgtaaggt gtcaccattg cttaaaatta cttaatcaaa ttgaaaagct 541 tgatatctgt ggaagatctg aattatttca taaagtgagg aggggctgga aaggactctg 601 taggcagtgt aagcagatat aatgattgga aaagaggtca ctctacaaga cattgtctta 661 gagttgactg agccacagac tgttgatttg cactgtgaag aggagttgcc agagcaggat 721 acggaggtgg agcctgaaag aagagcttac aaaataatac tttgttgcgg cggcggttgt 781 ggaacccggc ttcgattatt tgtagcagca acacagtttg gaatacgtgg cctgcaagac 841 ttactgctag aagaggtggt cattttgtgt cccgactgcc gtaacagcga tctgcagcat 901 ggcggacaat aaaggtagtg aaacagacgg gttgcatgaa tggtgcttat tagaagctga 961 ctgtagtgat attgaaaatg atttggacac attgcttgag caaaattcag attctgatgt 1021 atcagatctt ataagtaatg atggggactt ggaacaggga aactcccgag aactgtttca 1081 acagcaggag ttagaggaga gcaatgcttt gttgcaaagt ctaaaacgaa agtatattag 1141 tcctaaagct gtattacagc tgagtccaca acttgaatcc atttcgctgt catcagacca 1201 taaaactaag aggaaattgt ttgctgagca ggacagtgga gtagaattga cccttacaaa 1261 tgaaactgaa gatgttacta cattggtgca gcaggaggaa gaggtaccag ctttagagac 1321 atcttccacc agtaacttaa ggaaggaaga taatgcacat tataaagaac ttatgcgatg 1381 cagtaactta aaagctacct tactatcaaa atttaaaaat gcttttggtg taagctttgt 1441 tgaactgact cgccagttca gaagtaataa gacttgttgt aatgattggg tggtagcaat 1501 atatggtgta aattatgatt tatttgaaag ttctaagcaa ttactacaac agcattgtga 1561 ttatatttgg gttacagaaa tgtctgcaat gtttttatat ctgttgtgtt tcaaggctgg 1621 caaaaataga caaactgtta taaggttatt agtgtctatg ttatatgtgg cagaggagca 1681 aattttatca gaacctccaa aattgcgaag tacagtgtca gctttatttt ggtataaagg 1741 tagctcaaat gctgctacct ttacacatgg gtcttatcct aaatggatta tagaacaaac 1801 actgatagga catcaaacag gagaagctgc aacgtttgac atgtccacaa tggtacaatg 1861 ggcttttgat aatgatctca cagaggaagc tgacatagct tttcaatatg caaagctggc 1921 acctgatgat gtaaatgcaa ctgcttggtt ggctcacaat aatcaggcgc gttttgtaag 1981 agaatgtgct aatatggtta gatattataa aaaaggtcag atgcgagaaa tgtctatgtc 2041 ggcatggatc cactttaaat tagagcaagt agaaggggaa gggcagtggt caactattgt 2101 aaaatttatt aggtatcagg gtataaattt tattagtttt ttaagtgctt taaaagattt 2161 tttacatggt aaacctaaaa agaattgttt attaatatat ggccctccaa atactggaaa 2221 atcagcattt actatgtcat taattaaagt gttgcatggc agagtaatat catttgtaaa 2281 ttctaaaagt cacttttggt tgcaaccaat gtctgaagcc aaaatagctt tacttgatga 2341 tgctactgat ccatgttgga tatatatgga tacatattta agaaatggtc ttgatggaca 2401 cttagtttca ttagattgta agcataaagc acctatacaa atacgctttc ctccattact 2461 tataacatct aatattaatg caatggcaga acctaactat agatatttac acagtaggtt 2521 agtagcgttt gaatttccta atccctttcc tatgaaagat gacgataccc ctgaatttga 2581 acttactgac caaagctgga aatctttttt taaaaggctt tggagacaat tagacctcag 2641 tgaccaagaa gacgagggag aggatggaga acctgaaaaa gcgtttcgat gtgttgcaag 2701 atctactaat gaacatttat gaacaaggca gtgatacact agaatcacaa attgaacatt 2761 ggcaggcctt gcgaagagag gcagtgttac tttattatgc tagacaaaat ggggtgctgc 2821 ggctgggtta cttaccagtt ccaccactag ctacctcaga agccaaagct aaacaggcta 2881 ttagtatggt gttgcagctg caatctttac aacaatctcc ttatggcaca gaaaagtgga 2941 cactggtgga cacaagcata gaaaccttta aaaatactcc agagaaccat tttaaaaaag 3001 gacctataaa tgtggaggtt atatatgatg gtgatccgga caatgccaat ttgtatacta 3061 tgtggaaata tgtatattat atggatgata atgaccagtg gcaaaaaact gaaagtggcg 3121 ccaatcatac aggcatatat tatttaatag gggagtttaa acattattat gtgctgtttg 3181 ctgatgatgc caatagatac agtaaatctg gccaatggga ggtcaggatt aataaggaaa 3241 ctgtgtttgc ccctgtcacc agctccacac cacccgactc cccaggaggg tcccgagaac 3301 tacccggatc caccgctaac tccaaggcct caagcccaac ccaacagcca caacaagcct 3361 gtagtgacga aacaaccaag cggaagaggt acgggcgaag ggagtcaagc cccactgact 3421 ccagatgcag acgacgatcc tcgtcccggc aaaagaagca agggcgacga gcacggtccc 3481 gcacccggtc gcgctgcagc tccactcaaa ctcgatctag atccacctca aggaggtcca 3541 gatcaacctc caggggcaac aggaggtgta ggggagacac ccccagaggg caacgaggag 3601 tctcaacctc ctccagggga aggggaaggg gcagtagaag gtcatcctcc tcctcctccc 3661 ccacccccag aaccaaagcc tcacaacggg gatgcgacac acggtctgtt agggacagtg 3721 gcatctctcc tggggacgtg ggaagaaagc ttcagacagt tagtggaaga aattcaggaa 3781 gacttggacg attattggag gaggctctcg atcccccagt aattttactt cgtgggggtg 3841 ctaacacatt aaaatgtttt cgcaacaggg caaagcttag atatagagga cattataaag 3901 catttagcac atcttggtca tgggtagctg cagatggcac agagcgtcta ggcaggtcca 3961 gattgctcgt cagttttacc agttttaagc agcgaagtgg gtttctcgac ctagtaagat 4021 ttcctaaggg tgtagattgg tcactgggaa gttttgataa actgtaagta ctaacatagc 4081 ttttgctact aacacacata taacctattt ttactttttg tatgctttgc aatggtgcgt 4141 gctaaaagaa caaaacgaga ttctgctact aatatttaca gaacatgcaa gcaggcgggc 4201 acatgtccac ctgatgttat taataaagtg gaacagtcaa ccattgctga taatatactt 4261 aaatatggaa gtgctggtgt cttttttggt ggcctgggta ttagtacagg ccgagggact 4321 ggaggcacca caggatatgt gccattgggt gaaggtactg gagttcgtgt gggcagtaca 4381 cccacagtcg ttcggcctgc ccttgtgcct gaagtaatag gtcctgctga cttattacct 4441 gttgatacaa tagcccctgt tgacccagca tcgtcatcta tagttcctct tactgaatca 4501 tcaggtgtag accttttacc tggtgaaata gaaacaatag cagaagtaca tcctatacct 4561 gatgtgccca catttgatac tccagtagtg acaacaagca aaggctctag tgccatttta 4621 gaagtagctc ctgagcctac tccaccgaca cgtgttcgtg tcagcagaac acaataccat 4681 aatccagcat ttcatattat tacagaatct acaccaagtc aaggtgagag ttcattgtca 4741 gacgaaataa ttgtcgcctc tggtgcaggt ggacaatcag taggcgtttc tgaaaatata 4801 gaactgcagg atttatcaaa tagatattct tttgaaatag aaacaccaac accaccaagg 4861 cgtagcagta ccccattaca aagagctaca caagcattta gacaaagatc acttacaaat 4921 aggagactgt tacaacaagt gcctgttgaa gaccctttgt ttttaactca accatctaaa 4981 ttggttagat ttgcatttga gaatccagct tttgaagagg aagtaacaca ggtatttgaa 5041 caagaccttg caggttttgt agagcctcct aacagagatt ttttagatat tgcagaactg 5101 ggaaggccta gattttctga aacacgcgag ggttatgtta ggttaagcag attgggtcgt 5161 agagcaacta ttagaacaag ggcaggaaca caaataggag cacaagtaca tttttataaa 5221 gatctaagtt ctattaatac tgaagctcct attgagttgg atcttttagg gcagcattct 5281 ggggatgcaa ctatagttca tgggactgta gaaagcacat ttatagatac taatatagag 5341 gaaaatcctt tagctgaaca aatggagttg gaaattgata cttatcctga agctcattca 5401 tttgatgctt tgttagatga agcaacagac gattttagtg gttcacagtt agttataggc 5461 aatagaagat ccactacatc atatactgtt cctagatttg aatccccaag aaattcttct 5521 tattatgtac aggatttgca gggatattat gtagcctatc ctgaatctcg cgataaaata 5581 gaacttattt atccctcacc cacattacct gcagttgtca tacatacaga agatagtagt 5641 ggggactttt atttacatcc tagtttattg caaaggcgca gacgcaaacg aaaatatttg 5701 tgatttttac agatgtcggt gtggttgcca gccagtggta aggtatattt gccaccatca 5761 acacctgttg cgaaagttca aagcacggat gaatacatac agagaacaaa catcttctat 5821 catgcttata gtgaccgcct attaactgta ggacacccat atttcaatgt ttacaacaat 5881 gatggcacag tattagaggt ccctaaggtt tcaggaaatc aacacagagt ttttaggctt 5941 aaattaccag accctaatag atttgcttta gcagatatgt ccgtatataa tccagagaag 6001 gaaagattgg tatggggttg cagaggagta gaaataggta gaggacaacc attaggtgtt 6061 gggacaagtg gacatccatt atttaacaaa gtgaatgaca cagaaaaccc tgtatcatat 6121 aggacacaag catcgtccac agatgataga caaaatacct catttgatcc taaacaaatt 6181 caaatgttta ttataggttg tgcaccctgc ataggagaac attgggaagt agctgagagg 6241 tgtgctggtg ataataatga tgctggtaga tgtccaccta ttaagttagt aaattcagta 6301 attcaagatg gtgatatggc agatattggt tatgggaatt taaattttag aacactacaa 6361 caaagtagat cagacgtaag tttggatatt gtaaatgaaa cctgtaaata tccagacttt 6421 ttaaaaatgc aaaatgatgt ttatggagat tcttgttttt tctttgctcg ccgtgagcaa 6481 tgttatgcaa gacatttttt tgtacgagga ggtaaaccag gggatgacat acctggtgag 6541 caaattgatg cagggaccta caaaaatgac ttttacattc cagcagccac aggtcagaca 6601 caaaaaaata ttggcaactc aatgtatttc ccaacagtca gtggctcatt ggtatctagt 6661 gatgctcaat tatttaatag accattttgg ttacagcgtg cacaaggtca taataatgga 6721 atttgttggg ctaatcaatt gttcattacg gtagtagata acaccaggaa caccaatttt 6781 agtataagtg tatacactga aaatggcaaa gtaacagata ttaacgagta tgatgctaat 6841 aaatttaggg aatatcagag acatgtagaa gagtatgaaa tttcacttat actgcagcta 6901 tgtaaaatcc ctttaaaagc agatgtgtta gcacagatca atgctatgaa tccatctcta 6961 ttggaagagt ggcagttagg atttgtgcct gcaccagaca atcctcttca aagtacctac 7021 agatatatag aaagtttggc aacaccttgt ccagataaag tagctccaaa agaaagagaa 7081 gatccttatg ccccttatac gttttggaat gtagatttat ctgaacgctt atctttggaa 7141 ctggatcaat attccttagg acgaaagttc ctgtttcaag cgggtcttgt acaaaaaaca 7201 tctaaaaaaa catctaatgt atccaagggg accaaacgaa aacgcacgta aaataaaggc 7261 tgtttaccgt tttcggtaca atatatgtgt attccaagaa tgcttgttat tcatgtgcgt 7321 gactaatttg aactttggct tgaatgtcaa ccgcacccgg tacaagtaga taaaatcttg 7381 ctaccacagc agacacaaag gaatcactgt cggtctcaac acgctcggat ttggcgcatt 7441 caaccgtttt tg