ID   HPVMM9	STANDARD;	ds-DNA;	VRL;	458 bp.
XX
DE   Human papillomavirus isolate MM9, partial L1 cds, My09/My11 region. 
XX
AC   U12491
XX
DT   16-OCT-1994
XX
OS   Human papillomavirus DNA recovered from a gential swab sample, isolate  
OS     MM9 (PAP238a). 
OC   Human papillomavirus;Viridae; ds-DNA nonenveloped viruses; 
OC   Papovaviridae;Papillomavirus.
XX
RN   [1]
RP   1 - 458
RA   Manos,M.M., Waldman,J., Zhang,T. Greer,C., Eichinger,G., Schiffmann,M., 
RA   and Wheeler, C;
RT   "Epidemiology and partial nucleotide sequence of four novel genital 
RT   human papillomaviruses;"
RL   J. Infect. Dis. (1994) In press.
XX
XX   Created by HPV database on 21-APR-1995 from GenBank: U12491.
XX
XX   MM9, also known as PAP238a, was isolated from a genital swab sample.
XX   Samples were obtained from over 500 patients examined at either the
XX   Shasta/Diablo planned parenthood clinic or at a private practice
XX   in the state of California over the course of seventeen months.
XX   Each of the samples were cervical or vulvar/intraoital in origin.
XX   DNA was PCR amplified over the MY09/MY11 region and subsequently
XX   sequenced if the HPV digested products yielded unique RFLP patterns.
XX   This procedure resulted in the identification of four novel HPV
XX   types: W13B, PAP291, PAP155, and PAP238a, which have subsequently
XX   been renamed MM4, MM7, MM8, and MM9. Oligonucleotide probes over
XX   the MY9/MY11 region from these viruses have been reported by
XX   Hildesheim et al. (J Infect Dis 169: 235-40).   These probes were
XX   used to determine prevalence in different populations.  Prevalence
XX   for each of these viruses was similar to that seen in other
XX   characterized "intermediate risk" viruses probed for in these
XX   studies. In addition to anogenital sites, MM9 was identified in a
XX   periungual carcinoma with multiply infected digits.  It should be 
XX   noted that MM4 is extremely similar (90.8%) to novel HPVIS39 (U12481) 
XX   and MM7 is virtually identical to LVX82 (U12487).  Primer regions are 
XX   annotated in the sequence; information in this region is not accurate 
XX   due to primer degeneracy.
XX   
XX    
XX
FT  KEY              Location/Qualifiers
FT   CDS             <1..>458
FT                   /note="putative"
FT                   /product="major capsid protein"
FT                   /gene="L1"
FT                   /note="putative"
FT                   /codon_start=1
XX
SQ   SEQUENCE  458 bp;  145 a;  79 c;  84 g;  150 t;
     gcacagggtc ataataatgg tatttgttgg cataatcaat tatttttaac tgttgtagat        60
     actactagaa gcactaattt ttctgtatgt gtaggtacac aggctagtag ctctactaca       120
     acgtatgcca actctaattt taaggaatat ttaagacatg cagaagagtt tgatttacag       180
     tttgttcttc agttatgtaa aattagttta actactgagg taatgacata tatacattct       240
     atgaattcta ctatattgga agagtggaat tttggtctta ccccaccacc gtcaggtact       300
     ttagaggaaa catatagata tgtaacatca catgctatta gttgccaacg tcctcaacct       360
     cctaaagaaa cagaggaccc atatgccaag ctatcctttt gggatgtaga tcttaaggaa       420
     aagttttctg cagaattaga tcagtatccc cttggacg                               458