ID HPV70 STANDARD; DNA; VRL; 7905 bp. XX DE Human papillomavirus type 70, complete genome. XX AC U21941 XX DT 18-JAN-1996 XX OS Human papillomavirus type 70 DNA recovered from a patient with cervical OS condyloma. OC Human papillomavirus type 70;Viruses; dsDNA viruses, no RNA stage; OC Papovaviridae;Papillomavirus. XX RN [1] RP 1 - 7905 RA Forslund,O; RT "Direct Submission;" RL Submitted (01-MAR-1995) Ola Forslund, Clinical Virology, RL MedicalMicrobiology, Malmoe University Hospital, Ing. 78 MAS, RL Malmoe,S-205 02, Sweden. XX RN [2] RP 1 - 7905 RA Forslund,O. and Hansson,B.G; RT ";" RL Unpublished. XX XX Created by HIV database on 26-JAN-1996 from GenBank: U21941. XX XX The original sample designated HPV70 was isolated by G. Orth XX and colleagues; sequence for this isolate has not yet been XX published. The sequence presented here was independently XX isolated from a cervical brush sample from a patient XX diagnosed with cervical condyloma. Initial attempts to XX clone the entire genome were unsuccessful. The genome was XX cloned in pieces from three overlapping PCR products. The XX sequence HPVCP141 (Accession U12476), a My09-My11 fragment XX of a type 70 virus, differs by 2% (7 of 455 nts) from the XX corresponding region of the sequence in this entry. XX NCBI gi: 1160342 XX FT KEY Location/Qualifiers FT source 1..7905 FT /organism="Human papillomavirus type 70" FT /note="isolated from a cervical brush sample from a FT patient with diagnosis of cervical condyloma; from cloned FT overlapping PCR products" FT CDS 107..583 FT /gene="E6" FT /note="Method: conceptual translation supplied by author.; FT putative E6; NCBI gi: 717152" FT /codon_start=1 FT /translation="MARFPNPAERPYKLPDLCTALDTTLHDITIDCVYCKTQLQQTEV FT YEFAFSDLFIVYRNGEPYAACQKCIKFHAKVRELRHYSNSVYATTLESITNTKLYNLS FT IRCMSCLKPLCPAEKLRHVNTKRRFHQIAGSYTGQCRHCWTSNREDRRRIRRETQV" FT CDS 592..921 FT /gene="E7" FT /note="Method: conceptual translation supplied by author.; FT putative E7; NCBI gi: 717153" FT /codon_start=1 FT /translation="MHGPRPTLQEIVLDLYPYNEIQPVDLVCHEQLEDSDNETDEPDH FT VVNHQQQLLARREEPQRHKIQCMCCKCNTTLHLVVEASQENLRSLLQLFMETLSFVCP FT WCASGTQ" FT CDS 928..2886 FT /gene="E1" FT /note="Method: conceptual translation supplied by author.; FT putative E1; NCBI gi: 1160343" FT /codon_start=1 FT /translation="MANCEGTDGDGSGCNGWFLVQAIVDKQTGDTVSEDEDENATDTG FT SDLADFIDDTTDICVQAERETAQVLYNMQEAQRDAQSVRALKRKYGGSNLNKSPCAKP FT PGVHREQRVTLQELPVNICNKQARTNVYSVPDSGYGNMEVETAEVEVTVVNNTNGEEE FT GENGGENGGSIREECSSVDSAIDSENQDPQSPTAQLKTVLQANNQKAILLSQFKHTYG FT LAFNDLVRTFKSDKTICTDWVAAICGVNPTIAEGFKTLIQPYALYTHIQCLDTKYGVY FT ILLLIRYKCGKNRITVGKGLSKLLHVPESCMLIEPPKLRSPVAALYWYRTGMSNISEV FT SGTTPEWIQRLTVIQHGIDDSVFDLSDMVQWAFDNDVTEDSDIAYGYALLADSNSNAA FT AFLKSNCQAKYVRDCATMCRHYKRAQKKQMTMAQWIRFRCDKCDDGGDWRPIVQFLRY FT QGVEFITFLCAFKEFLKGTPKKNCIVIQGPPNTGKSYFCMSLMHFLQGTVISYVNSTS FT HFWLEPLADAKVAMLDDATGTCWSYFDTYMRNALDGNPISLDRKHRHLIQIKCPPILI FT TSNTNPVEENRWPYLTSRLTVFTFPNAFPFDQNRNPVYTINNKNWKSFFQKTWCKLDL FT QQDEDEGDNDGNTIPTFKCVTGENTRTL" FT CDS 2813..3895 FT /gene="E2" FT /note="Method: conceptual translation supplied by author.; FT putative E2; NCBI gi: 1160344" FT /codon_start=1 FT /translation="MKETMMETLSQRLNALQEKILEHYEQDSKLIYDQINYWKYVRLE FT NAIFYAARERGMHTIDHQVVPPGTTSKAKAYQAIELQMALESLAQTDFNKEEWTLKDT FT SNEMWQTKPKQCFKKKGVTVEVWYDGNKDNSMHYVVWGAIYYKTHTDTWCKTEGYVDY FT WGIYYVHEQHKTYYEVFKQDAQMYGTSGKWEVHCNGNIIHCPDSMYSTSDDTVPTTEL FT TAELQHTTPAHTAATTPCTKKTKSAPSCKCGVSRPSETDGVFVDLVTSKGCNKRRHQC FT CGDTTPIVHLKGDKNGLKCLRYRLRKFNSLYENISCTWHWIGGKGSKHTGILTVTYTT FT EAQRQKFLETVRIPPSVHVSVGYMTL" FT CDS <3408..3662 FT /gene="E4" FT /note="start codon absent; Method: conceptual translation FT supplied by author.; putative E4; NCBI gi: 717156" FT /codon_start=1 FT /translation="FIVLTLCTVPVTTQYPLLSLLQNYNTPPRPIPPQQPHAPKKLSR FT RRLASVESPDPQKQTECSWTLLQVKAATNDGTSVVVTLHL" FT CDS 3909..4145 FT /gene="E5" FT /note="Method: conceptual translation supplied by author.; FT putative E5; NCBI gi: 717157" FT /codon_start=1 FT /translation="MYIVYISMIALVFLVWFAVCLYICCSVPLLPSVHLCAYMWLLLF FT VFIVVHTTPLQMFCIYLLFFILPMWFLHILSVYA" FT CDS 4209..5609 FT /gene="L2" FT /note="Method: conceptual translation supplied by author.; FT putative L2; NCBI gi: 1160345" FT /codon_start=1 FT /translation="MVSSRASRRKRASATDIYKTCKQSGTCPPDVVNKVEGTTLADRF FT LQWASLGIFLGGLGIGTGTGTGGRTGYIPLGGRPSTVVDVTPARPPVVIEPVGPTEPS FT IVQLVEESSVVSSGTPIPTFTGTSGFEITSSATTTPAVLDITPASGSVQISTTSYTNP FT AFADPSLIEVPQTGEVSGNIFVTTPTSGTHGYEEIPMQVFASHGTGTEPISSTPVPGV FT SRVAGPRLYSRAYHQVRVNNFDFVTRPSSFVTFDNPAFEPGDTSLTFEPADTAPDPDF FT LDIVRLHRPALTSRRGTVRFSRLGKKATMFTRRGTQIGAQVHYYHDVSNITATEDIEM FT QPLLTSESTDGLYDIYADADIDNAMLHTTSHTGSTGPRSHLSFPSIPSTVSTKYSNTT FT IPFTTSWDIPVTTGPDIVLPTASPNLPFVPPTSIDTTVAIAIQGSNYYLLPLLYYFLK FT KRKRIPYFFTDGFVAV" FT CDS 5590..7104 FT /gene="L1" FT /note="Method: conceptual translation supplied by author.; FT putative L1; NCBI gi: 1160346" FT /codon_start=1 FT /translation="MALWRSSDNTVYLPPPSVAKVVNTDDYVTRTGIYYYAGSSRLLT FT VGHPYFKVPVNGGRKQEIPKVSAYQYRVFRVSLPDPNKFGLPDPSLYNPDTQRLVWAC FT IGVEIGRGQPLGVGVSGHPLYNRLDDTENSHFSSAVSTQDSRDNVSVDYKQTQLCIIG FT CVPAMGEHWAKGKACKSTQQGDCPPLELVNTAIEDGDMIDTGYGAMDFRTLQETKSEV FT PLDICQSVCKYPDYLQMSADVYGDSMFFCLRKEQLFARHFWNRGGMVGDTIPSELYIK FT GTDIRERPGTHVYSPSPSGSMVSSDSQLFNKPYWLHKAQGHNNGICWHNQLFITVVDT FT TRSTNFTLSACTETAIPAVYSPTKFKEYTRHVEEYDLQFIFQLCTITLTADVMAYIHT FT MNPAILDNWNIGVTPPPSASLVDTYRYLQSAAIACQKDAPTPEKKDPYDDLKFWNVDL FT KEKFSTELDQFPLGRKFLLQVGARRRPTIGPRKRPASAKSSSSASKHKRKRVSK" XX SQ SEQUENCE 7905 bp; 2424 a; 1495 c; 1694 g; 2292 t; cttataacat tttacaatca taatttaaaa aaagggaggc accgaaaacg gtcacgaccg 60 aaaacggtgt atataaaacc atgcaaaagt tgcttgccca tacggaatgg cgcgatttcc 120 caatcctgca gaacggccat acaaattgcc tgacctgtgc acggcgctgg acactacatt 180 gcacgacatt acaatagact gtgtctattg taaaacacag ctacagcaaa cagaggtata 240 tgaatttgca tttagtgatt tatttatagt atatagaaac ggggagccat atgctgcatg 300 ccaaaaatgt attaaatttc atgctaaagt aagggaacta cggcattatt cgaactcggt 360 gtatgcaaca actttggaaa gcataactaa taccaagtta tataatttat caataaggtg 420 catgagttgc ctgaaaccat tgtgtccagc agaaaaatta aggcatgtta ataccaaaag 480 aagatttcac caaatagcag gaagctatac aggacagtgc cgacactgct ggaccagcaa 540 ccgggaggac cgcagacgta tacgaagaga aacacaagta taaatataaa tatgcatgga 600 ccacggccga cattgcaaga gattgtttta gatttatatc catacaatga aatacagccg 660 gtcgaccttg tatgtcacga gcaattagaa gattcagaca atgaaacaga tgaacccgac 720 catgtagtta atcaccaaca acaactacta gccagacggg aagaaccaca gcgtcacaaa 780 atacagtgta tgtgttgtaa gtgtaatact acactgcact tagtagtaga agcctcacaa 840 gagaacctgc gatctctact gcagctgttt atggagacac tgtcatttgt gtgtccctgg 900 tgtgcatcgg gaacccagta acctgcaatg gccaattgtg aaggtacaga tggggatggg 960 tcgggatgta acggatggtt cctagtacag gcaatagtag ataaacaaac gggcgacact 1020 gtgtcagagg acgaggacga aaatgcaaca gatacaggtt cagacttggc agactttatt 1080 gatgatacta cagatatttg tgtacaggca gagcgcgaga cagcacaggt actgtataat 1140 atgcaagagg cccaaaggga tgcacaatca gtgcgtgcct taaaacgaaa gtatggaggg 1200 agcaatctaa ataaaagtcc ttgtgcaaaa ccgccaggcg tacataggga acaaagggta 1260 acactacaag agctcccggt aaacatatgc aataaacagg caagaacaaa cgtgtattca 1320 gtaccagaca gcggctatgg caatatggaa gtggaaacag ctgaagtgga ggtaactgta 1380 gtaaataata caaatgggga agaggaaggg gaaaatggcg gggaaaatgg cggcagcata 1440 cgggaggagt gcagtagtgt agacagtgct attgatagtg agaatcaaga tccacagtca 1500 cctactgcac agctaaaaac agtattacag gctaataacc aaaaagccat actactatca 1560 caatttaaac acacatatgg attagcattt aacgacctgg tacgtacatt taaaagtgat 1620 aaaaccatat gtactgactg ggtagcagca atatgtggag taaatcccac catagcagaa 1680 ggctttaaaa cactaattca gccatatgcg ttatatacac atatacagtg tttggatacc 1740 aaatatggag tgtatatact actattaatt agatataaat gtggaaaaaa caggataaca 1800 gtaggcaaag gattaagtaa attattacat gtgccagaaa gttgtatgct aattgaacca 1860 cctaaattgc gtagccctgt tgcagcactg tattggtata gaactggaat gtctaatata 1920 agtgaagtgt caggtactac gccagaatgg atacagcgat taacagtaat acagcatgga 1980 atagatgaca gtgtatttga cctgtctgat atggtacaat gggcatttga taatgatgta 2040 acagaagaca gtgacatagc atatggatat gcattattag cagatagtaa tagtaatgct 2100 gcagcatttt taaaaagtaa ctgccaggca aaatatgtac gcgactgtgc tacaatgtgc 2160 agacattata aaagggcaca aaaaaaacaa atgactatgg cgcaatggat taggtttaga 2220 tgtgataaat gtgacgatgg gggcgactgg cgaccaatag tgcaatttct aaggtatcaa 2280 ggggtagaat ttataacctt tttgtgtgca tttaaggagt ttttaaaggg caccccaaag 2340 aaaaattgca tagtaataca gggaccacca aacacaggca agtcatactt ttgtatgagt 2400 ttaatgcact ttttacaagg tacagtaatt tcatatgtaa attccactag tcatttttgg 2460 ttagagccac ttgcagatgc aaaggtagca atgttggatg atgccacagg cacatgctgg 2520 tcatatttcg atacgtatat gagaaatgca ttagatggaa atcctataag ccttgacaga 2580 aaacatagac atttaataca aattaagtgt ccacccatat taataacatc caataccaat 2640 cctgtagagg aaaataggtg gccataccta actagcagac taacagtgtt tacatttcct 2700 aatgcattcc catttgacca aaacaggaat ccagtgtaca caatcaataa taaaaactgg 2760 aaaagttttt tccaaaagac ttggtgcaaa ttagacttgc agcaggacga ggatgaagga 2820 gacaatgatg gaaacactat cccaacgttt aaatgcgtta caggagaaaa tactagaaca 2880 ttatgaacag gacagtaaac taatatatga tcaaatcaat tattggaaat atgtgcgact 2940 ggaaaatgca atattttatg cagcacggga acgtggcatg catactatag accaccaggt 3000 ggtgccacca ggcactactt caaaagcaaa agcatatcaa gctattgaac tgcagatggc 3060 cctagagagc cttgcacaaa ctgactttaa taaagaggag tggacattaa aggacacaag 3120 taatgaaatg tggcagacaa agccaaaaca atgttttaaa aaaaaaggtg ttacagtgga 3180 ggtgtggtac gatggaaaca aggacaattc tatgcattat gtagtgtggg gagcaatata 3240 ttataaaaca catacagaca cgtggtgtaa aacagaaggg tatgtggatt actggggtat 3300 atattatgtg cacgagcagc ataagacata ttatgaagtg tttaagcagg atgcacaaat 3360 gtatgggact agcggaaaat gggaagtgca ttgtaatggc aacataattc attgtcctga 3420 ctctatgtac agtaccagtg acgacacagt acccactact gagcttactg cagaactaca 3480 acacaccacc ccggcccata ccgccgcaac aaccccatgc accaaaaaaa ctaagtcggc 3540 gccgtcttgc aagtgtggag tctccagacc ctcagaaaca gacggagtgt tcgtggacct 3600 tgttacaagt aaaggctgca acaaacgacg gcaccagtgt tgtggtgaca ctacacctat 3660 agtgcattta aaaggtgaca aaaatggttt aaagtgtctt aggtatcgat tgcgaaaatt 3720 taattcattg tatgaaaata tttcatgtac ttggcattgg atagggggca agggaagtaa 3780 acatacaggt atactaactg taacatatac tactgaagca caacgccaaa aatttttgga 3840 aactgttaga attccaccta gtgtacatgt atctgtggga tatatgacat tgtaacagca 3900 catgctgtat gtatattgta tacatatcaa tgattgcatt ggtgtttttg gtgtggtttg 3960 ctgtatgctt atatatatgt tgcagtgtcc cgcttttgcc gtctgtgcat ttgtgtgcgt 4020 atatgtggct acttttattt gtgtttattg ttgtacatac cacaccattg caaatgtttt 4080 gtatatattt actatttttt atattgccta tgtggttttt acacatcctt tcagtatatg 4140 cttaagttgt gttgctgcat agtgtattgt acattacttg tttttacatt tatattgtac 4200 caataaacat ggtttctagc cgtgcgtcca ggcgtaagcg tgcatctgca acagacatat 4260 ataaaacctg caagcaatca ggcacatgtc cgcctgatgt tgttaataag gtggagggta 4320 ccacactggc tgataggttt ttacaatggg ctagtttagg tatttttttg ggtggtttgg 4380 gaatcggtac gggtactggt actgggggcc gcacagggta cattcctttg gggggtaggc 4440 ctagtacagt tgtagatgtt acccctgcac gtcctcctgt ggttatagaa cctgtaggac 4500 ctacagaacc ttctattgtt cagttggtag aggaatctag tgttgtttcc tctggtacac 4560 ccatccctac ttttacaggc acatctgggt ttgaaattac atcttctgca accacaacac 4620 ctgctgtatt agatattacc cctgcttctg ggtctgttca aattagtacc actagttata 4680 ccaatcctgc atttgctgat ccatcgttaa ttgaggttcc acaaacaggt gaggtgtcag 4740 gcaatatatt tgttactact ccaacatctg gaacacatgg atatgaagaa attcctatgc 4800 aggtttttgc ctcacatgga acaggcacag aacctattag tagtactcct gttcctggtg 4860 ttagtcgtgt ggcaggccca cgtttatata gtagggccta tcatcaggtt cgtgttaata 4920 attttgattt tgtaacccgc ccttcatctt ttgtaacatt tgacaatcca gcttttgagc 4980 ctggtgatac atccttaaca tttgaacctg ctgacacagc tcctgatcca gattttctgg 5040 acattgttcg tttacatcgg cctgctttaa cctcacgacg cggaacagta cgctttagta 5100 ggcttggtaa aaaggccaca atgtttaccc ggcggggtac acaaattggg gcacaggttc 5160 attattatca tgatgttagt aacattactg caacagaaga cattgagatg caacctttac 5220 ttacctctga atctacagat ggtttatatg atatatatgc agatgcagat atagataatg 5280 caatgttaca tactacttct catacaggtt ctacaggacc taggtcccat ctttcatttc 5340 cttctatacc ttctacagtg tctacaaaat atagtaatac aaccattcca tttactactt 5400 cttgggacat acctgtaacc actggccctg acatagtttt acctactgca tcccccaatt 5460 tgccctttgt ccctcctaca tctatagata ccacagttgc aatagccatt cagggctcca 5520 attattattt attgccttta ttatattatt ttctaaagaa acgtaaacgt attccctatt 5580 tttttacaga tggctttgtg gcggtctagt gacaacacgg tgtatttgcc acccccttct 5640 gtggcgaagg ttgtcaatac agatgattat gtaacacgta caggcatata ttattatgct 5700 ggaagctctc gcttattaac agtagggcat ccttatttta aggtacctgt aaatggtggc 5760 cgcaagcagg aaatacctaa ggtgtctgca tatcagtata gggtatttag ggtatcccta 5820 cctgatccta ataagtttgg ccttccggat ccttcccttt ataatcctga cacacaacgc 5880 ctggtatggg cctgtatagg tgtggaaatt ggtagaggcc agccattggg cgttggcgtt 5940 agtggacatc ctttatataa tagattggat gatactgaaa attctcattt ttcctctgct 6000 gttagtacac aggacagtag ggacaatgtg tctgtggact ataagcaaac acagttatgt 6060 attataggct gtgttcctgc tatgggagag cactgggcta agggcaaggc ctgtaagtcc 6120 actcaacagg gcgattgtcc accattagaa ttagttaata ctgcaattga ggatggcgat 6180 atgatagata caggctatgg tgccatggac tttcgtacat tgcaggaaac caaaagtgag 6240 gtaccactag atatttgcca atccgtgtgt aaatatcctg attatttgca gatgtctgct 6300 gatgtatatg gggacagtat gtttttttgt ttgcgcaagg aacagttgtt tgccaggcac 6360 ttttggaata gaggtggcat ggtgggcgac acaatacctt cagagttata tattaaaggc 6420 acggatatac gtgagcgtcc tggtactcat gtatattccc cttccccaag tggctctatg 6480 gtctcttctg attcccagtt gtttaataag ccctattggt tgcataaggc ccagggacac 6540 aataatggca tttgttggca taaccagttg tttattactg tggtggacac tacacgtagt 6600 actaatttta cattgtctgc ctgcaccgaa acggccatac ctgctgtata tagccctaca 6660 aagtttaagg aatatactag gcatgtggag gaatatgatt tacaatttat atttcaattg 6720 tgtactatca cattaactgc tgacgttatg gcctacatcc atactatgaa tcctgcaatt 6780 ttggacaatt ggaatatagg agttacccct ccaccatctg caagcttggt ggacacgtat 6840 aggtatttac aatcagcagc tatagcatgt caaaaggatg ctcctacacc tgaaaaaaag 6900 gatccctatg acgatttaaa attttggaat gttgatttaa aggaaaagtt tagtacagaa 6960 ctagatcagt ttcctttggg gcgcaaattt ttactacagg taggggctcg cagacgtcct 7020 actataggcc ctcgcaaacg ccctgcgtca gctaaatcgt cttcctcagc ctctaaacac 7080 aaacggaaac gtgtgtccaa gtaatgtatg tatgttgtat gctgtgtatt atgtactatt 7140 acatatttgt gtttttatgt tgtatgcttg cacactgttt acatatttgt gtttgtatgt 7200 tgtatgcttg cacactgtac tgtatatgtt tgtcctggta catatttgtg gttgtatgtg 7260 tatatgttgc gtgctatgtg tatgttttag aagtatgtgt gtatgtatgt ttttgttaat 7320 aaagtatgta tggaggtttc atttgtggtt gcaccctgtg actaaggtgt tgtccctgtt 7380 ttacatataa taggagtgtg attaccaaca tttcctacat aattttatgc cctaccctaa 7440 ggtgtgtgta taccatttgt agtttataca tttatatttt atagtgggtt acctgtatac 7500 agcaacggcc attttgtgtg aaaccgtttt cggttgcatt tggctttgta ccatcagtta 7560 cccttataaa ccttttgtat cagcaaaaac atgtcctgta acctaagttc acctacatac 7620 ttggcactac taacagtttt agtggcgcac ctacacttag tcatcatcct gtccaggtgc 7680 actacaacaa tgctttggca accttatgca cctccaccct gtctaataaa gtgcttttag 7740 gcatgtattt tacctgtttt tacttaccta agagcatagt tggcctgtat aacagctttt 7800 acatccaaga atgtgtcgtt tggtgcaagt tatattttgt gactaatatt tttacagacc 7860 tgtgtgcaac cgaaataggt tgggcagaca ttcctatact tttat 7905