ID HPV63 STANDARD; ds-DNA; VRL; 7348 bp. XX DE Human papillomavirus type 63 (HPV-63), complete genome. XX AC X70828 XX DT 04-OCT-1993 XX OS Human papillomavirus type 63 DNA recovered from punctate keratotic OS lesions of the foot. OC Human papillomavirus type 63 OC Viridae; ds-DNA nonenveloped viruses; Papovaviridae; OC Papillomavirus. XX RN [1] RP 1-7348 RA Egawa,K., Delius,H., Matsukura,T., Kawashima,M. and RA De Villiers,E.M.; RT "Two novel types of human papillomavirus, HPV63 and HPV65 RT comparisons of their distinct clinical and histological features RT and their DNA sequences to other HPV types"; RL Virology 194, 789-799 (1993). XX XX Submitted (27-JAN-1993) on tape to the EMBL Data Library by: H. XX Delius, Deutsches Krebsforschungszentrum, Abt ATV, Im Neuenheimer XX Feld 506, W -6900 Heidelberg, FRG. XX XX The 7348 bp genome of HPV-63 was isolated from punctate keratotic XX lesions of the foot. Infection from HPV-63 produces XX intracytoplasmic inclusion bodies (ICB) in most cells of the XX epidermis. These inclusions have been previously shown to contain XX mainly E4 proteins for HPV-1. Up to date three morphologically XX different types of ICBs have been distinguished, and certain types XX of HPV are preferentially found in one type of ICB or another. XX HPV-63 is associated with a filamentous type of ICB (FI-ICB). The XX author notes that histologically, these FI-ICBs were seen as XX heavily stained keratohyalin-like substances with filamentous XX brush-like structures within vacuolated cells, seen either as XX single cells or clumped in nests. XX XX FT KEY Location/Qualifiers FT CDS 102..527 FT /note="putative" FT /note="ORF E6 from bp 6 to 527" FT /product="transforming protein" FT /gene="E6" FT /note="putative" FT /codon_start=1 FT CDS 554..820 FT /note="putative" FT /note="ORF E7 from bp 548 to 820" FT /product="transforming protein" FT /gene="E7" FT /note="putative" FT /codon_start=1 FT CDS 822..2678 FT /note="putative" FT /note="ORF E1 from bp 777 to 2678" FT /product="replication protein" FT /gene="E1" FT /note="putative" FT /codon_start=1 FT CDS 2620..3816 FT /note="putative" FT /note="ORF E2 from bp 2596 to 3816" FT /product="regulatory protein" FT /gene="E2" FT /note="putative" FT /codon_start=1 FT CDS 3107..3571 FT /note="putative" FT /note="ORF E4 from bp 3104 to 3571" FT /gene="E4" FT /note="putative" FT /codon_start=1 FT CDS 3846..5360 FT /note="putative" FT /note="ORF L2 from bp 3807 to 5360" FT /product="minor capsid protein" FT /gene="L2" FT /note="putative" FT /codon_start=1 FT CDS 5371..6894 FT /note="putative" FT /note="ORF L1 from bp 5350 to 6894" FT /product="major capsid protein" FT /gene="L1" FT /note="putative" FT /codon_start=1 FT source 1..7348 FT /organism="Human papillomavirus type 63" FT /sequenced_mol="DNA" XX SQ SEQUENCE 7348 bp; 2239 a; 1359 c; 1612 g; 2138 t; gttaacaact atcaggcgat tctctagttc taacacgaac gtttacggtc gttgccagct 60 ttttccttat aaaactctgg tgggaatttc tcttgggaca gatggacctg acatctgtac 120 attcggttcg ggatctgagt tctgctctcc gtatcccatt tattgatttg gttgttcctt 180 gcaatttttg cttgaaattt cttacaaatg ctgaaaaatt gctgtttgat tattttgact 240 tgcatcttat ctggcgagat aatttcgtgt ttgcttgttg tcagtgctgt gctaggcatg 300 ttagtctgct tgagtttatg ctttattatc aggagtcttt cgaggtatct gaagtagaag 360 aattacttaa tcaacctctt gtaaatattg gtttaaggtg tgttacatgc acaaaaaaac 420 tgactgtttc agaaaagtta gctgttgttt ctgctggaga aagagttcat aaagtaagga 480 acaaattcaa agcaaagtgc agtttgtgca gactctacat tatatagttt gtgcagactc 540 tatataatta acaatggtgg gagagcagcc aaatataggt gatttggtga gtcaagaaga 600 accaagcgtc ctagatctaa attgttatga ggatatacct gctgaggagg aggagtctga 660 atatccatat gcaattgtgc ttccttgtgg tttgtgcgat cagctgttaa ggctgacctg 720 cgtttctgac ctgtctactc ttacgcgtct ggaggagctg ctgttaggct cactgaggat 780 cgtgtgtccc ctgtgtgcca ttcgacacca acgacactaa gatgaccgac agaggtacaa 840 ataatgatga ttggtatatt gtggatgagg cagaatgtcg ggatgatgat gagagcgaat 900 tggaggattt ggaggacacc tataattcat tgtttaatag atctgaaagt gacatatcag 960 atctattaga cgatacgcag caaagtcagg gaaattccct ggaactgttc cacttacagg 1020 agcacttgca gaacgagcag gacctaaata ccctaaaacg aaagtactta aacagtcctc 1080 cgcaggcaag tgccacagag actgcctgca atagcctcag tcccagattg gaatctataa 1140 caatttcgca gagggaaaaa aaggcaagaa agcaactatt tacacaaaat gacagtggca 1200 tagagttatc gctatgccag gatgaagttg acaatattaa cgaagcgctt caggagcagg 1260 tagacatcgt acagtctctg ggaggtgggg tgcgtgactg tataggagtg gacattttga 1320 aatgcagtaa tacaagatct gctctacttg ccaaatttaa agacacagta ggtgtcagtt 1380 ttactgacct caccagagca tacaaaaaca acaagacatg ctgtagttac tgggtcatag 1440 cagtgtgggg agtaacatct acgtctgtgg acgttgtgaa aactgtattc caagttcagt 1500 gtaattatat gcatgtagaa cattgtttaa ctgaaaaaaa taagtttcta attgtattag 1560 ctggctttaa agctcaaaaa agtagagaaa cagtgttaaa tctcgtaact agcagtttga 1620 atgtgcaaag taattacata atggctgaac caccaaaaaa tagaagtatg gcggcagcgt 1680 tatattggta taggagatct atgtctccag ctgtatatac ctggggagaa atgccagatt 1740 ggatggcgca gcagacattg ttgaatcatc aattagcatc agaaaagcat tttgaattgt 1800 cacaaatggt acaatgggct tatgataatg gctatacaga tgaaagtgat attgcatact 1860 attatgctat tttagcagaa gaagatgaaa atgcaaaagc attcttggct tctaatgcac 1920 aagcaaaata tgttaaggac tgtgctagaa tggttagtca ttacaaaagg gcagaaatga 1980 gtagtatgtc tatgtcagca tggatttata aaagactgga ggaagttgaa aatggtggtg 2040 actggaaaca tattgtaaag ttcttgaggt ttcaagaagt agaatttata agtttcatga 2100 tagcatttaa ggaattgtta agtggtaaac caaagaaaaa ttgtcttgta atatatggtc 2160 caccaaatac tggtaaatct atgttttgta tgagtttgtt gagagtatta aaaggaaaag 2220 taatatctta tgtaaatagc aaaagtcaat tttggttgca accactagct agcactaaaa 2280 tagcattatt agatgatgca acaaaaccag catgggatta tattgattta tttttgagaa 2340 atgctttaga tgggaatcct atttgtgtag atctgaaaca taaggcacca caacaaataa 2400 aatgtcctcc acttatgata acttctaata taaatgttaa ggctgatgta tgttggatgt 2460 atttacatag taggataaca tgttttgaat ttaaacaacc ttttccattt gatgaaaatg 2520 gtcaaccggc attttcctta acagacatca attggaaatc tttttttgaa aggttttgga 2580 gccagttaga cttaagtgac caagaagacg aggagagtga tggaaagcct caacaaccgc 2640 ttagactggc tacaagagca gcttctaact ctatatgaga aagacagtaa agatattgaa 2700 gatcagataa tgcagtggaa tctacttaga caggaacaag tgttattcca ctatgcccga 2760 aaaaagggaa taatgcgact tggcctgcaa gttgtgcctt cccttgcagc ttcccaggat 2820 aaagcaaaaa cagctataga aatgactctt tatcttagtg gcctcagaga ctcacaatat 2880 ggttctgaac agtggtcttt acaagatact agcagagaaa tctttttagc accaccagat 2940 catacattca aaaagggagg gcaaacaatt gaggtaatct atgatgagga tcccaataat 3000 agcaccagac atactgtatg gcgccatata tattatcaaa acggtgataa cagatggaga 3060 aaagcagcta gtgatgtaga tgttcatggt gtgttttatt tagaatatga tggtgtcaaa 3120 aactactatg ttgactttca agaagaggcc aatcgatata gcaaaacagg tcgatatact 3180 gttcaatatg agggtaaaag gttcacaaat gttatgtctc ctgtcaatag ctccccacta 3240 cggacttctg ggtctcctac agacaccaac ccagccaccc aaggacaatc cacccaaact 3300 gccagaaaag cagagacgaa ggggtcgaga caccacccga aatcgccggc tgttcgcaag 3360 cgacggccct acggacgaag aaggtccaga agtcccagag ataccaccct cagacgagga 3420 gaaggagaat cggccagagc ctctgccggt agtggagaac gggtggcatt catttctccg 3480 ggagacgttg gaacatcaac taggtcgcct ccaaagggag gtcaatcaag acttcgaaga 3540 cttatacagg aggctcggga tccacccata atttgtctga aggggggccc taatcaactt 3600 aagtgcttaa ggtataggat taaagcttca aattcatctg actttgaaag tatcagtact 3660 acatggcatt gggtacataa taaatgcaca gatagagtag gtcatgcacg tatgctggtg 3720 cgttttatat caacagaaca acgtgaccga tttttagata aggtggtggt gcctaaatct 3780 gtttctgtta ttttaggggc atttgacggt tcctaagggt gggtgttggg gtatattttg 3840 taatcatgtt aagagtacgt aaacgacgag ctgctccaca agatatttat cctgcttgta 3900 aggttgcaaa caattgcccc cctgatatac aaaataaaat tgaacaaaca acagttgctg 3960 acaagatttt acaatatggg agtttgggaa tattcctggg aggtttgggt attggtactg 4020 gcaagggtgg gggtggccgg tatggttata cacctctagg ggacagtggt gcggtgcgag 4080 ttggtggcag aagtacacct gtaagaccaa cagtacctgt ggagactgta ggaccaaggg 4140 atatattacc tatagattca ttggatcctt tagggccctc agtcattgaa ctagaagata 4200 ttccagccac aacagtggaa gtagtggctg aagtgcatcc catatctgat actccacaaa 4260 taccggcacc tactactgat gaatctagtt cagctgttct tcatattcca caagaaagtc 4320 ctgctgcacg tacaatcaca cgttcccaat acaataatcc tttattcagg atcacagcta 4380 gtgcagacat agcatcaggt gaagcttcag catctgataa tatttttata gatgtagata 4440 cgccgggtca aatagtagga caagaaatac cactagttaa ttttgatatg ggacctatat 4500 ctactgaagg tgagcttgaa actgagttca caactagtac accaagaacc acacaagtac 4560 aggaaaggcc tacacgtttc tataatagac gctattatga acaagtgcca gttactgcac 4620 ctgaatttat cacaaggcct gcttccttag ttacttttga gaatcctgca tttgaaagga 4680 gtgtttcttt gatttttgaa caagatttag aagatatttt aaatgctcct gatcaggatt 4740 ttagagacat tgtttattta agcagaccaa catacagtcg tgcccctgat ggccgcatgc 4800 gcctaagccg cctgggacgc agagccacta taagtaccag aagtggtgtt actataggtg 4860 ctcaatcaca cttttatatg gatattagct ctatctcctc aaatgatggc attgagttac 4920 aaacactggg tgaagcttct ggcgagactg tggtgcaaag ttctcttgct gcatcggatc 4980 ctattgaagc agaacattca ttcattgaac cagcaccatc tatagatagt tatgatattg 5040 tttcacttca gtctgagact tattcagatg aacatttgtt agatatgtat gaacctgtag 5100 gttcttcctt gcaattacaa atatcagacg tcagaggtcg gccaactgtt attgatattc 5160 cctttagacc ccgcaggcct ccattaggtc ctataaatgc tggtgttgat atctatagtc 5220 caactgctag tgttggatca cctactataa atcctactga tcttgacatt ccattaatta 5280 ttatacattt agataattca acaggggatt atgatttaca tccaagtttg cgtaaacgtc 5340 gcaaattagt tcatatttga tattttacag atggctgttt ggcttcctgc ccagaataag 5400 ttttaccttc ctacccaacc gatcaccaag attctaagca gcgatgatta tgtgtctcgc 5460 accaacatct tctatcacgc taccagtgat cgactgctca ttgtgggaca cccgctctat 5520 gaggttaccc gtgcaaatga taacactatg actgtgccta aagtttctcc aaatcagtat 5580 agagtctttc gtgttagatt tccagatcct aaccgatttg cctttggaga taaggatatt 5640 tttgacccag aaactgagag actagtttgg ggtcttagag gcatagaaat cggtaggggt 5700 caaccattag gtgtgggtat ttcaggcaat ccattattaa ataggtttga tgatgctgaa 5760 aatcctagca gatataataa tacacatgca actggtgata ataggcaaaa tgttgctttt 5820 gatgcaaaac aaacccaaat gtttctaatt ggctgtacac cagccactgg ggaacactgg 5880 tcaatagctc gacgctgtgc aggaacacag tttcagcttg gagattgtcc tcctatagaa 5940 ttagttaaca cagttattga ggatggtgat atgtttgaca taggtctagg tgctatggac 6000 tttggttctt tgcaagcaaa caaagcagat gctcctttgg atattgcagg cactgtctgc 6060 aaatatccag attatattaa aatgggacag gaagtacatg gtaattctct gtttttcttt 6120 gctcgcagag aacaaatgta tttaaggcat gtatttacac atgctggaat tgttagtgaa 6180 aaagagaaag tccctaccag tgcatatatt gctgctaaag ccgagcaacc ccaaaatact 6240 attgctacag ataattattt tgtagctccc agtggatctt tagtgtcctc tgatgtgcaa 6300 atttttaata ggccctattg gttacaacgt tctcaaggac agaacaatgg tatctgttgg 6360 agaaatgagt tatttgtaac tgtagctgat aataccagag gaaccacgat gaatataaat 6420 gttcttaaca aagcaacccc tgagacttat gatagcgcag attataatga gtatactcgc 6480 catgtggagg aatatgagtt atcctttata gttcagcttt gtaaggtaaa actaacacct 6540 gaaaatttag catttttgca taatatggat ccaacaatta tcgattcctg gcagttaaca 6600 gtttctcaac ctcctgcaaa tgctatagag gacaagtata gatttattga atcattagca 6660 acaaaatgtc ctgataacgt gcccccaccc actcctactg atccttacaa agatttacgt 6720 ttttgggatg tagacctcag tgagcgaatg tcggagcagc ttgatcaatt tcctttaggc 6780 cgcaaatttt tgtatcaaag tggtcttgca cagcgttctg ttccaaaaac tgtgaatttc 6840 agaaaacgta gatcctccaa tactactgtg gccaaacgga ggcgacgggc ctgaatatac 6900 atgtgaatgt tgaattatat aatgtgaatt gtgaattctt gactttggca cttgcacttt 6960 attcttggca tactgatact tgaaacttgt tcaatgcttg aaggttacac acctgtacag 7020 tattgttaat aaacgtttat gctgctgtca tttacctgtc ttcgagtcat tattgcctag 7080 tcatatagcc tcatgacttg gcatgcaatt ggtatgtggc agatacttca aacaggatac 7140 tggtatcctt tttggcgcgc gcgcgaattt tgaagttacc actgttccaa cttgttctga 7200 gacgtctgga tctgatcccg accgctgtcg ttactgccaa agacgaaagt ggtaggcgcg 7260 aaccgtttgt ggtttccctg gggctagcag aaactcttta ggttgcgacc gttttcggtc 7320 gggccaataa tctctttcga tcgttgtt 7348 //