ID HPV61 STANDARD; ds-DNA; VRL; 7989 bp. XX DE Human papillomavirus type 61 (HPV61), complete genome. XX AC U31793 XX DT 04-JUL-1995 XX OS Human papillomavirus type 61 DNA. OC Human papillomavirus type 61;Viridae; ds-DNA nonenveloped viruses; OC Papovaviridae;Papillomavirus. XX RN [1] RP 1 - 7989 RA Delius,H; RT "Direct Submission;" RL Unpublished. XX XX Created by HIV database on 1-NOV-1995 from GenBank: U31793. XX XX XX FT KEY Location/Qualifiers FT CDS 102..542 FT /note="ORF E6 from bp 69 to 542" FT /product="transforming protein" FT /gene="E6" FT /note="putative" FT /codon_start=1 FT /translation="MGPCNPTNIFLLCKDYEVDFEDLRLTCVFCKNELTTEELLAFAL FT KELSIVWRHNWPFGVCAPCLAREVKVRELRHWDHSCYGPTVEQTTGRSLAELYIRCHA FT CSKPLSIQEKEHQVQAYIHFHYIAGQWTGRCCQCRGPCTARWQP" FT CDS 518..805 FT /note="ORF E7 from bp 512 to 805" FT /product="transforming protein" FT /gene="E7" FT /note="putative" FT /codon_start=1 FT /translation="MHGQVATIKDIVLEERPEVVDLHCNEQLLDSSESEEEDSVREQL FT VEQAQQAYRVVTTCGICKCPVRLVVQCGDADLKVLHELLLGDLSIVCPGCA" FT CDS 811..2769 FT /note="ORF E1 from bp 760 to 2769" FT /product="replication protein" FT /gene="E1" FT /note="putative" FT /codon_start=1 FT /translation="MADSEGTESGDGTEAAERAGGWFLVEAVVDRTTGYQVSSDEEDN FT SIDTGEDLVDFIDTRRPGDGQEVPLALFVQQNAQDDAATVQALKRKYTCSPASSTCVS FT LVDSELSPRLDAIRIHRGQDRARRRLFEQDSGYGHTQVEIGASESQVPGDAQHEGGGE FT SVQEAEEERGGGDGEAEATGNQETQAQEQAADILEVFKVSNLKAKLLYKFKDLFGLAF FT GELVRNFKSDKSICGDWVICAFGVYHAVAEAVKTLIQPICVYAHIQIQTCQWGMVILM FT LVRYKCGKSRETVAHSMGKLLNIPERQMLIEPPKIRSAPCALYWYRTAMGNASEVYGE FT TPEWIVRQTVVGHAMQEAQFSLSMLVQWAYDNDITDESVLAYEYALLGNEDPNAAAFL FT ASNCQAKYIKDAITMCKHYRRAEQAKMTMAQWITHRGRKVADTGDWKAIVKYLRYQQV FT EFVPFISALKLFLKGVPKKSCMVFYGPSDTGKSLFCMSLLNFLGGAVISYVNSSSHFW FT LSPLADTKVGLLDDATYQCWQYIDTYLRTVLDGNAISIDRKHRNLTQLKCPPLMITTN FT INPLEDPTFKYLHSRIVVFQFLHKCPLNSNGDPVYTLNNENWKSFFRRSWARIEGSDQ FT QEEEEEEDEDGVTSRPFRCVPGEITRPL" FT CDS 2705..3853 FT /note="ORF E2 from bp 2669 to 3853" FT /product="regulatory protein" FT /gene="E2" FT /note="putative" FT /codon_start=1 FT /translation="MRMESLADRLDACQEKLLDLYEKDSNKLEDQILHWHYVRLENAM FT LFKARQAGLTRVGHQMVPTLSVTKGKAHKAIEVHLSLQGLQTSAYAHEPWTLQTTSLE FT MWNTQPQRCWKKKGRRLTVKFDGEDHKAVEYVSWGYIYVQSTETDLWYKVPGKVSYKG FT LYYEMEGQEHYYVTFAQEAQKYGETGKWEVHMGNTVIYEPCASVSSTQDAVREVSTAE FT TAGHLRDNTTQTTTTPTCVGPTQTSTSVQTPPHKRQRLHRDREQQPDTTQKDNHKRVD FT STDQWINGHRNSTETGDNCDSYSSPVIHLKGDPNKLKCFRYRLQHSVPELFDKASSTW FT HWAGGQSTTRAAFVTLWYVNVEQRKQFLNRVTIPKGIQATAGYMSMCI" FT CDS <3294..3611 FT /note="ORF E4 from bp 3294 to 3611" FT /gene="E4" FT /note="putative" FT /codon_start=1 FT /translation="FMNPAPLYLVPRTPCEKYPLLKLLDTCGTTPHRPPPPPRAWAPP FT RHPPRCRRRLISDSDSTETESSSPTQHKKTTTSGWTVLTSGSTVTVTAQKQGTTVTVT FT VHL" FT CDS <3941..4210 FT /note="ORF E5 from bp 3941 to 4210" FT /gene="E5" FT /note="putative" FT /codon_start=1 FT /translation="TINNPGRACVFDRWMVYDTPAAYTFLAFLSFLTKRIFGVFLCHI FT CRIVVHIHASVVVYGITVAPPAIHCCSYVNSVPCVCCSFAICIPL" FT CDS 4407..5786 FT /note="ORF L2 from bp 4215 to 5786" FT /product="minor capsid protein" FT /gene="L2" FT /note="putative" FT /codon_start=1 FT /translation="MALKRRKRASATDLYRTCKQSGTCPPDVVPKVEGDTLADRILKW FT ASLGVFFGGLGIGTGSGTGGRTGYVPIGTRPPTVVDIGPVSRPPVVIDPVGAADPSIV FT TLVEESSVIEAGATVPTFSGSGGFNVTSSSTTTPAVLDITPSGGSVQVSSTSFINPLF FT TEPSIIEPPQAGDLAGHVISSTPTAGSHSFEEIPMHTFATSEGPGSSTPLPGIRRLAR FT PRLNLYSKANQQIKVANPTFMSDPASLITYDNPIFDPEETIIFEHPSIYTPPDPDFLD FT IVSLHRPALTSRQGTVRFSRLGQRATLRTRSGRRIGARVHFYHDISPIPSDAVELQPL FT VPSSSPSITYDIYADPEVLDLPAQHTQPTLTVQGPSLSAASASTKVHNVTVPLATGLD FT TPVTSGPDVDFAHAPAPVPAVPYVPATHPHSIYIQGSDFYLLPAYVFFPKRRKRVPYS FT FSDGFVAAW" FT CDS 5764..7281 FT /note="ORF L1 from bp 5593 to 7281" FT /product="major capsid protein" FT /gene="L1" FT /note="putative" FT /codon_start=1 FT /translation="MALWRPGDGKVYLPPTPVSKVISTDRYVQRTNLFYYGGSSRLLT FT VGHPYCSLQLDGLQGKKNTIPKVSGYQYRVFRVQLPDPNKFALPDGTLYNPDTERMVW FT ACRGIEVGRGQPLGVGTSGHPLYNRLDDTENTTLLVAESSDSRDNVSVDYKQTQLLIV FT GCKPPIGEHWTKGTACANPAPRPTDCPPLEFTNTTIQDGDMVETGYGAIDFAALQENK FT SEVPLDICTTICKYPDYLQMAAEPYGDCMFFCLRREQMFARHFFNRQGVMGEALPDSY FT YLKGANDKAAPGSYIYSPTPSGSMVSSDSQLFNKPYWLQRAQGHNNGICWFNELFVTV FT VDTTRSTNLTICTATSPPVSEYKATSFREYLRHTEEFDLQFIFQLCKIHLTPEIMAYL FT HNMNKALLDDWNFGVVPPPSTSLEDTYRFLQSRAITCQKGAAAPPPKEDRYAKLSFWT FT VDLRDKFSTDLDQFPLGRKFLLQAGPRSVSVSRKRAAPSSTPTSSPATKRKKRKQ" XX SQ SEQUENCE 7989 bp; 2113 a; 1726 c; 1973 g; 2177 t; taacaatcat atatgtaaaa agtaggttgg caccgaaaac ggtcggaccg acctgggtac 60 atatataaag aaaccgtagg gtcagcaaag cacactcatc tatgggaccg tgcaatccaa 120 ctaatatttt cctgctctgc aaggactacg aggtggactt tgaggattta aggctgacat 180 gtgtattttg caaaaatgaa ttaacaacag aagaattgct ggcgtttgca ctaaaggagc 240 taagcattgt gtggagacat aactggccat ttggagtatg cgcaccatgc ttggcacgtg 300 aagtaaaagt gagggagctg cgacattggg accattcctg ttacggaccc actgtggaac 360 agacaacagg acggtcatta gctgaactat atatacggtg ccatgcatgc agcaaaccgt 420 taagtataca ggaaaaggag catcaggtac aggcatacat ccacttccac tatatagctg 480 gacagtggac gggaaggtgt tgccagtgta gagggccatg cacggccagg tggcaaccat 540 aaaggacata gtccttgaag agcgtcctga ggtggttgac ctacattgca atgagcagtt 600 attagacagc tcagagtcag aggaggagga tagtgtgcgt gagcaacttg ttgaacaagc 660 acagcaggcc tacagggtgg ttactacctg tggcatttgt aagtgtccag ttaggctggt 720 ggtgcagtgc ggagacgcag acctgaaggt gctacatgaa ctactgctgg gcgacttgtc 780 catagtgtgt cctggctgcg cataagggac atggctgaca gtgaaggtac agaaagcggg 840 gatgggaccg aggccgcgga acgcgcaggg gggtggtttc tggtagaagc cgtggtagac 900 cgcaccacag gataccaggt gtccagtgat gaggaggaca atagcattga cacaggggaa 960 gacctagtag acttcataga tacaaggcgc cccggggatg ggcaggaagt gccgcttgcg 1020 ttgttcgttc aacaaaatgc acaggatgac gctgcaacgg tgcaggcact aaaacgaaag 1080 tatacatgta gccctgcaag cagcacctgt gtgtccttgg tggacagtga attaagtccc 1140 cggctggacg ccatacggat acaccgggga caggacaggg ctaggagaag gctgtttgag 1200 caagatagtg gctatggcca tacgcaagtg gaaattggag catcagaaag tcaggtaccg 1260 ggggatgcgc aacatgaggg ggggggggaa tccgtgcagg aagcagagga ggagcgtggg 1320 gggggggacg gagaggccga ggccacaggt aaccaggaaa cgcaagcgca ggagcaggcg 1380 gcagacatat tagaggtgtt taaggttagt aatttaaaag caaaattact gtacaaattc 1440 aaggacctat ttggactagc atttggggag ctggtaagaa attttaaaag tgataagtca 1500 atatgtgggg actgggtaat atgtgcgttt ggtgtatacc atgctgtggc agaggctgta 1560 aaaaccttaa tacaacctat atgtgtgtat gcacacatac aaatacagac atgccagtgg 1620 ggaatggtaa tattaatgct tgtgcgatac aaatgtggga agagcaggga aacagtagca 1680 cacagcatgg gaaaactgtt aaacataccg gaaagacaga tgctaattga accaccaaag 1740 attagaagcg caccgtgcgc actatattgg tatagaacag ccatgggaaa cgccagcgag 1800 gtgtatggcg aaacacctga atggatagta agacaaacag tggtaggaca tgcaatgcaa 1860 gaagcacagt ttagtttgtc catgttagtg caatgggcat atgacaatga cataacagat 1920 gaaagtgtgc tggcctatga atatgcattg ctgggaaatg aggacccaaa tgcggcggcc 1980 ttcttggcca gtaactgcca agcaaagtat attaaagatg caattacaat gtgtaagcat 2040 tatagacgtg cagagcaggc aaaaatgaca atggcacagt ggattacaca tagaggccgc 2100 aaggtggcag acacagggga ttggaaggct attgtaaagt atttaagata tcaacaggta 2160 gaatttgtac catttattag tgcccttaaa ttgtttctaa agggggtacc aaaaaaaagc 2220 tgcatggtat tttacggacc aagcgacaca gggaagtcgc tattttgcat gagcctacta 2280 aattttctgg gaggagctgt gatttcatat gtaaattcaa gcagccattt ttggttatca 2340 cctttagcag atactaaagt gggactactg gacgatgcca cctatcagtg ctggcaatac 2400 atagatacat atttacggac agtattagat ggcaatgcca taagcataga taggaaacac 2460 agaaatttaa cacagctgaa gtgtcctcca ttaatgataa caacaaatat aaatccacta 2520 gaggatccta cgtttaaata cctgcacagt agaatagtgg tgtttcagtt tttacataag 2580 tgtccactaa acagtaatgg ggacccagta tataccctga ataatgaaaa ttggaaatca 2640 tttttccgaa ggtcctgggc acgcatagag ggatctgatc aacaggagga ggaggaggag 2700 gaggatgagg atggagtcac tagccgaccg tttagatgcg tgccaggaga aattactaga 2760 cctctatgaa aaagatagca acaagcttga ggaccaaata ttgcattggc actatgtgcg 2820 tttggaaaat gcaatgttat ttaaggcacg acaagcagga ctaacgcgtg tgggccacca 2880 gatggtgcca acacttagtg ttacaaaagg caaagcacat aaagcaattg aagtacatct 2940 gtcattgcaa gggttacaaa caagtgcata tgcgcatgaa ccctggacat tgcaaaccac 3000 ctctttggaa atgtggaata cgcagccaca acgatgctgg aagaaaaaag gacgcagact 3060 aacagttaaa tttgatggcg aggaccacaa agcagtggaa tacgttagtt gggggtatat 3120 ttatgtacaa agcacagaaa ctgatctgtg gtataaggtt cctggaaaag tgtcatataa 3180 gggcctatat tatgaaatgg agggacagga acactattat gtgacatttg cacaggaggc 3240 ccaaaaatat ggggaaacag gcaaatggga ggtacatatg ggaaacacag tgatttatga 3300 accctgcgcc tctgtatcta gtacccagga cgccgtgcga gaagtatcca ctgctgaaac 3360 tgctggacac ctgcgggaca acaccacaca gaccaccacc acccccacgt gcgtgggccc 3420 cacccagaca tccacctcgg tgcagacgcc gcctcataag cgacagcgac tccacagaga 3480 cagagagcag cagcccgaca caacacaaaa agacaaccac aagcgggtgg acagtactga 3540 ccagtggatc aacggtcacc gtaacagcac agaaacaggg gacaactgtg acagttacag 3600 ttcacctgta atacacctaa aaggtgatcc aaataaatta aagtgttttc ggtataggtt 3660 acaacattca gtacctgagc tgtttgacaa agcatcatcc acatggcatt gggccggtgg 3720 acaaagtaca accagagcag catttgtaac attgtggtat gttaatgtgg aacaacgaaa 3780 acaattttta aatcgtgtaa ccattccaaa gggtatacaa gccactgcag gctatatgtc 3840 aatgtgtata taagtgtgtg tatacaaaaa cataaatact gtgttgcaag tattgagcca 3900 gctacagcta tttacatacc acacctgcat tattgtgtaa accataaaca atcctggacg 3960 agcttgtgtg tttgatagat ggatggtgta cgatactcct gctgcttata cttttctggc 4020 tttcctatct ttcctcacta agcgcatttt tggtgttttt ctgtgccata tatgtaggat 4080 tgttgtgcat atacatgcaa gtgttgtggt atatggaata actgtggcgc caccagccat 4140 acactgctgc tcatatgtaa atagtgttcc ttgtgtctgt tgttcgtttg caatatgtat 4200 ccccttgtag ttagttcccc tcaggggttt gcattactgg ttgtggatca gcaaaactgc 4260 ggattgttat ttttgttttt gctattactg cttattgcaa tactgttgta caggctttta 4320 cattaggtgg tgtaccttgt gtgttttccc tccccacagt tttttacttt gttatatttt 4380 tatatgttta tggcctaata aacattatgg ctcttaaacg tcgcaagcgt gcatctgcaa 4440 ctgacctcta tcgtacatgt aaacaatcag gcacatgtcc ccctgatgtt gttccaaagg 4500 tggaagggga tacccttgct gaccgcattt taaagtgggc tagtttgggg gttttctttg 4560 ggggattggg tataggcacc ggctctggta ctgggggtcg tactgggtat gtgcctattg 4620 gcacccggcc tcctactgta gtggatattg gccctgtgtc ccgcccccct gtagttattg 4680 atccagtggg tgctgccgat ccctctatag ttacccttgt agaggaatcc agcgtcattg 4740 aggctggggc tacagtccct acattttccg ggtccggggg cttcaatgtc acgtcgtctt 4800 ctactaccac cccggctgtg ttggacatta ctccatcggg tgggtctgtg caggttagca 4860 gcaccagttt tattaatcct ttattcactg agccttctat tattgaacct cctcaggcag 4920 gggaccttgc cggccatgtc atttccagta cccctaccgc tgggtcccac agttttgagg 4980 aaatcccaat gcacaccttt gctacctctg agggtcctgg aagtagtacc ccgctgcctg 5040 gcatccgtcg ccttgcacgg ccccgcctga atttatacag taaggctaac caacaaatta 5100 aggttgctaa ccctacattt atgtctgatc cagcctcctt aattacatat gacaatccta 5160 tatttgatcc tgaggaaact attatatttg aacatcctag tatatataca cctcctgacc 5220 cggacttttt agatattgtg tccttacaca ggcccgcgct cacatcccgc cagggaactg 5280 tacggtttag tcgccttggt caacgtgcca ccttgcgtac ccgtagtggt aggcgcattg 5340 gcgctcgggt acacttttac catgacatta gtcccattcc atcggatgct gtggagttac 5400 agcctttggt gccgtcctcg tcccctagta taacatatga tatatatgct gaccctgagg 5460 tgttggatct tcctgcacaa catacacaac ccacacttac agtacagggc ccttccctct 5520 ctgctgcatc tgcatctacc aaggtacaca atgtcactgt tccactggcc acagggcttg 5580 atacgcctgt gacatctggc cctgatgttg attttgcaca tgctcctgcg cctgtaccag 5640 ctgtaccata tgtacctgcc acccatccac attctatata tattcagggc tctgattttt 5700 atttgttgcc tgcttatgtg ttttttccta aacgtcgtaa acgtgtaccc tattcttttt 5760 cagatggctt tgtggcggcc tggtgacggc aaggtatacc tgcctcccac tcctgtgtct 5820 aaagttatca gtactgaccg ttatgtgcaa cgcaccaact tattttatta tggtggcagt 5880 tcccgtctgc ttactgtagg acatccctat tgtagtttgc agcttgatgg gctgcagggc 5940 aagaaaaaca ctatccccaa ggtgtctggc tatcaatata gggtgtttag ggtacagctt 6000 cctgacccta ataaatttgc tttgcctgat ggcaccttgt ataatcctga tactgagcgc 6060 atggtgtggg cctgcagggg cattgaggtt ggtagggggc agccattggg ggttggtact 6120 agtggtcacc cgctgtacaa tcgcctggat gacactgaaa acaccacatt acttgttgca 6180 gagtcctctg acagtcgtga caatgtgtct gttgattata agcagaccca gctacttatt 6240 gtaggttgca aaccccctat tggggaacac tggacaaagg gtactgcttg tgctaacccc 6300 gcgccccggc ccactgactg tcctccattg gaatttacaa ataccaccat acaggatggc 6360 gatatggtgg aaacaggcta tggggccatt gattttgctg cattgcagga aaataaatct 6420 gaagtgccat tggatatttg caccactata tgcaagtatc ctgattattt acaaatggct 6480 gctgaaccat atggagactg tatgtttttt tgtttacgca gggaacaaat gtttgctcgc 6540 cactttttca atcgccaggg tgtcatgggt gaggcactgc ctgactctta ttatcttaag 6600 ggtgcgaatg acaaggcggc ccctggtagt tatatttatt cccctacgcc tagtggctct 6660 atggtgtcct ctgattccca attatttaat aagccatatt ggctgcaacg tgcccagggc 6720 cacaacaatg gtatttgttg gtttaatgaa ttgtttgtaa ccgttgtgga taccacccgc 6780 agtactaatt taaccatttg tactgctaca tccccccctg tatctgaata taaagccaca 6840 agctttaggg aatatttgcg ccatacagag gagtttgatt tgcaatttat ttttcagtta 6900 tgtaaaatac atttaacccc tgaaattatg gcctacctac ataatatgaa taaggccttg 6960 ttggatgact ggaactttgg tgtggtacca ccaccctcta ccagtttaga agacacatat 7020 aggtttttgc agtccagagc tattacatgt cagaagggtg ctgctgcccc gccgcccaag 7080 gaggatcgct atgccaagtt atccttttgg actgttgatt tacgagacaa gttttccact 7140 gatttggatc agtttccttt ggggcgcaag tttttattgc aggccggtcc ccgctcagta 7200 tctgtgtcac gcaaacgtgc tgcccccagc tctaccccta catcctcccc tgctacaaaa 7260 cgcaaaaagc gtaaacagta gtgatgtttg tctgtatgct gttgttgtgc atgtgttgtt 7320 ttgtattgtg ctgtactggc cttgtgcatg tgctgtttgt atggtgcctg gtttgtatga 7380 ctgtatttgc tatggttgtg tattgtgtga ccctgtactg acccttgtcc cctgtgttgt 7440 gtatctgtgg aatgtgtgtt acactgtgtg tgcattaata aactgtgtgt catgtgtgtg 7500 tggtgtccgg tgcaccctgt gagtaagtgt gtttattgtt gcacgcctta ttttgtgcag 7560 cttccccatt tctgtgttcc ttgtgttcgg gtagccattt tgtgttgccg accgttttcg 7620 gtctcccgcc ttttttgttg ccgaccggtt tcggtcgccc gcctttttgg ttgtggcact 7680 atgccactgt acacatacca catcctgttt aaacaaactt tatgtgttgc acctgggtgt 7740 gtttgacagg ttgctaacac acacagtttg gaacaatgct ccatctatct tttttgacat 7800 gttgtgcaat tactgtgctt ttaggcacat attttgtgct gactactttc ccttaattgc 7860 tggtttggca ttgcttgtat acttttctag ccaggaaact gtcttgcaac tttgggcatg 7920 ttttacacac attatgttac aaagccgatc cggtcgctcc ctatgtctca ttctttttat 7980 gatagttta 7989