ID HPV59 STANDARD; DNA; VRL; 7896 bp. XX DE Human papilloma virus type 59, complete viral genome. XX AC X77858 XX DT 10-OCT-1994 XX OS Human papillomavirus type 59. OC Human papillomavirus type 59;Viridae; ds-DNA nonenveloped viruses; OC Papovaviridae;Papillomavirus. XX RN [1] RP 1 - 7896 RA Rho,J., Roy-Burman,A., Kim,H., De Villiers,E.M., Matsukura,T. RA andChoe,J; RT "Nucleotide sequence and phylogenetic classification of human RT papillomavirus type 59;" RL Virology 203, 158-161 (1994). XX RN [2] RP 1 - 7896 RA Choe,J; RT "Direct Submission;" RL Submitted (25-FEB-1994) to the EMBL/GenBank/DDBJ databases. J.Choe, C/O RL Hajo Delius, DKFZ - Abt. ATV, Im Neuenheimer Feld 506,69120 Heidelberg, RL FRG. XX XX Created by HIV database on 1-NOV-1995 from GenBank: X77858. XX XX HPV-59 was isolated and cloned from a vulvar intraepithelial XX FT KEY Location/Qualifiers FT source 1..7896 FT /organism="Human papillomavirus type 59" FT CDS 55..537 FT /gene="ORF putative E6" FT /note="NCBI gi: 557237" FT /codon_start=1 FT /translation="MARFEDPTQRPYKLPDLSTTLNIPLHDIRINCVFCKGELQEREV FT FEFAFNDLFIVYRDCTPYAACLKCISFYARVRELRYYRDSVYGETLEAETKTPLHELL FT IRCYRCLKPLCPTDKLKHITEKRRFHNIAGIYTGQCRGCRTRARHLRQQRQARSETLV FT " FT CDS 542..865 FT /gene="ORF putative E7" FT /note="NCBI gi: 557238" FT /codon_start=1 FT /translation="MHGPKATLCDIVLDLEPQNYEEVDLVCYEQLPDSDSENEKDEPD FT GVNHPLLLARRAEPQRHNIVCVCCKCNNQLQLVVETSQDGLRALQQLFMDTLSFVCPL FT CAANQ" FT CDS 872..2806 FT /gene="ORF putative E1" FT /note="NCBI gi: 557239" FT /codon_start=1 FT /translation="MADSEGTDGEGTGCNGWFFVQAIVDKKTGDKISDDEDENATDTG FT SDLVDFIDDTTTICVQAERETAQALFNVQEAQRDAREMHVLKRKFGCSIENSSEKAAA FT GKKAKSPLQEISVNVNHPKVKRRLITVPDSGYGYSEVEMLETQVTVENTGNGDSNGSV FT CSDSQIDCSDSSNMDVENIVPTSPTNQLLQLLHSKNKKAAMYAKFKELYGLSFQDLVR FT TFKSDRTTCSDWVTAIFGVNPTVAEGFKTLIQPYVLYAHIQCLDCAWGVVILALLRYK FT CGKNRITVAKGLSTLLHVPDTCMLIEPPKLRSGVAALYWYRTGMSNISEVIGETPEWI FT QRLTIIQHGVDDSVFDLSEMIQWAFDNDLTDESDIAYEYALIADSNSNAAAFLKSNCQ FT AKYLKDCAVMCRHYKRAQKRQMSMSQWIKWRCDKIEEGGDWKPIVQFLRYQGVEFITF FT LCALKDFLKGTPKRNCIVLCGPANTGKSYFGMSLLHFLQGTVISHVNSNSHFWLEPLT FT DRKLAMLDDATDSCWTYFDTYMRNALDGNPISVDRKHRHLVQIKCPPMLITSNTNPVT FT DNRWPYLNSRLMVFKFPNKLPFDKNRNPVYTINDRNWKCFFERTWCRLDLNEEEEDAD FT SDGHPFAAFKCVTGSNIRTL" FT CDS 2736..3848 FT /gene="ORF putative E2" FT /note="NCBI gi: 557240" FT /codon_start=1 FT /translation="MQTVMDTLSQRLSVLQDQILEHYENDSKDINEHINYWKLVRMEN FT VILFAARENNIHTLNHQVVPTFLVSKNKACEAIELQSNRTSTVMPCFLKHFLGAVCHS FT SWHVSCIVHCSFLNSVCAKLSNAICSKENTMHYTSWTFIYYVNDVGQWCKTTGNVDFW FT GLYYKVEEEQVYYVKFIHDAKKYGTTDKWEVHYNGKVIDCYDSMCSTSDEQVSTAGSS FT EQLSYPSATPPEATYLGPQTWNRQTKTGKRPRQCGYTQHPQSTSVSVDYCDNPVVRLH FT PGNNPRRHIPCSNTTPIIHLKGDKNGLKCLRYRLRKVHWLFENISSTWHWTGNRGSAK FT TGILTLTYTSETQRNEFLDTVKIPNSVQIHVGYMSV" FT CDS 3268..3615 FT /gene="ORF putative E4" FT /note="NCBI gi: 557241" FT /codon_start=1 FT /translation="MMPKNMGLQTSGKCIIMARLLIVMTLCAVPVTSKYPLLDLLSNY FT HTPPQRPPKPRTWAPKRGTVRRRLESDQDSVDTHSTLSLPACQWTTVTTQSSVCIQAT FT TRDGTSLAVTLRL" FT CDS 3908..4129 FT /gene="ORF putative E5" FT /note="NCBI gi: 557242" FT /codon_start=1 FT /translation="MITLVFVCCVCVCLCVCCNVPLLQSVYMCAYTWLLVFVYIVVIT FT SSYECFLLYILFFIIPLLLLYAHAILSIQ" FT CDS 4231..5625 FT /gene="ORF putative L2" FT /note="NCBI gi: 557243" FT /codon_start=1 FT /translation="MVSHRAARRKRASATDLYKTCKQAGTCPSDVINKVEGTTLADKI FT LQWTSLGIFLGGLGIGTGSGTGGRTGYIPLGGRTNTIVDVSPAKPPVVIEPVGPTDPS FT IVTLVEDSSVITSGAPAPTFTGTSGFEISTSSTTTPAVLDITPTSSVQISSSSFINPA FT FTDPSVIEVPQTGEISGNILISTPTSGAHGYEEIPMQTFATEGTGLEPISSTPNPTVR FT RVAGPRLYSRANQQVRVSNADFLTRPSTFVTYDNPAYDPIDTTLTFDPSSEVPDPDFM FT DIVRLHRPALTSRRSTVRFSRLGQRATMFTRSGKQIGARVHFYHDISPIPHAEDIELQ FT PLVSSQAATDDIYDIYADITDEAPTSTANTAFTIPKSSFQSLSLTRSASSTFSNVTVP FT LATAWDVPVNTGPDIVLPNTNIVEPTYSTTPFTTIQSINIEGTNYFLWPIYYFLPRKR FT KRVPYFFTDGSMAF" FT CDS 5606..7132 FT /gene="ORF putative L1" FT /note="NCBI gi: 557244" FT /codon_start=1 FT /translation="MALWRSSDNKVYLPPPSVAKVVSTDEYVTRTSIFYHAGSSRLLT FT VGHPYFKVPKGGNGRQDVPKVSAYQYRVFRVKLPDPNKFGLPDNTVYDPNSQRLVWAC FT VGVEIGRGQPLGVGLSGHPLYNKLDDTENSHVASAVDTKDTRDNVSVDYKQTQLCIIG FT CVPAIGEHWTKGTACKPTTVVQGDCPPLELINTPIEDGDMVDTGYGAMDFKLLQDNKS FT EVPLDICQSICKYPDYLQMSADAYGDSMFFCLRREQVFARHFWNRSGTMGDQLPESLY FT IKGTDIRANPGSYLYSPSPSGSVVTSDSQLFNKPYWLHKAQGLNNGICWHNQLFLTVV FT DTTRSTNLSVCASTTSSIPNVYTPTSFKEYARHVEEFDLQFIFQLCKITLTTEVMSYI FT HNMNTTILEDWNFGVTPPPTASLVDTYRFVQSAAVTCQKDTAPPVKQDPYDKLKFWPV FT DLKERFSADLDQFPLGRKFLLQLGARPKPTIGPRKRAAPAPTSTPSPKRVKRRKSSRK FT " XX SQ SEQUENCE 7896 bp; 2473 a; 1457 c; 1594 g; 2372 t; gttaagaccg aaaacggtgc atataaaggt agttgaaaag aaaagggcaa cggcatggca 60 cgctttgagg atcctacaca acgaccatac aaactgcctg atttgagcac aacattgaat 120 attcctctgc atgatattcg catcaattgt gtgttttgca aaggggaact gcaagaaaga 180 gaggtatttg aatttgcttt taatgactta tttatagtgt atagagactg tacaccgtat 240 gcagcgtgtc tgaaatgcat ttcattttat gcaagagtaa gagaattaag atattataga 300 gattccgtgt atggagaaac attagaggct gaaaccaaga caccgttaca tgagctgctg 360 atacgctgtt atagatgcct aaaacctcta tgtccaacag ataaattaaa gcatataact 420 gaaaaaagaa gattccataa tatagctgga atatatacag gacagtgtcg tgggtgtcgg 480 acccgagcaa gacacctaag acagcaacga caagcgcgta gtgaaacact ggtgtaaaac 540 aatgcatgga ccaaaagcaa cactttgtga cattgtttta gatttggaac cacaaaatta 600 tgaggaagtt gaccttgtgt gctacgagca attacctgac tccgactccg agaatgaaaa 660 agatgaacca gatggagtta atcatccttt gctactagct agacgagctg aaccacagcg 720 tcacaacatt gtgtgtgtgt gttgtaagtg taataatcaa cttcagctag tagtagaaac 780 ctcgcaagac ggattgcgag ccttacagca gctgtttatg gacacactat cctttgtgtg 840 tcctttgtgt gcagcaaacc agtaacctgc aatggccgat tcggaaggta cagatgggga 900 agggacgggg tgcaatggat ggttttttgt gcaggcaata gtagataaaa aaacaggtga 960 caaaatttca gatgacgagg atgaaaatgc aacagataca ggttcagact tggtagattt 1020 tattgatgat accacaacaa tttgtgtaca ggcagagcgc gagacagcac aggccttgtt 1080 taatgtgcag gaagcccaaa gggatgcacg ggaaatgcat gttttaaaac gaaagtttgg 1140 gtgcagtata gaaaacagta gtgagaaagc ggcggcagga aaaaaagcta agtcaccatt 1200 acaagaaata tcagtaaatg ttaaccaccc aaaagtaaaa agaaggttaa taacagtgcc 1260 agacagcggc tatggctatt ctgaagtgga aatgctcgag actcaggtaa ccgtggagaa 1320 tactggaaat ggggatagca atggcagtgt ttgtagcgac agtcaaatag actgtagcga 1380 cagcagtaac atggatgttg aaaacatagt tccaacatcc cccactaatc aattgttaca 1440 gttattacat agcaaaaata agaaagcagc tatgtatgca aaatttaaag aattgtatgg 1500 gttatcattt caagatttgg ttaggacatt taaaagtgac agaactacct gtagcgattg 1560 ggtaaccgcc atttttggtg ttaatccaac tgtagcagaa ggatttaaaa cattaataca 1620 accctatgtg ctatatgcac atatacaatg cttagattgt gcatggggag tagtaatatt 1680 agcattatta agatataaat gtggaaaaaa tagaataaca gttgcaaaag gacttagcac 1740 attactacat gtaccagata cgtgcatgtt aattgaacca cccaaattgc gtagtggtgt 1800 tgcagcacta tattggtaca gaacaggaat gtccaatatt agtgaagtta taggggaaac 1860 gcccgaatgg atacaaagac taacaattat acaacatgga gttgatgata gcgtgtttga 1920 cctgtcagaa atgatacaat gggcgtttga taatgaccta acagatgaaa gtgatattgc 1980 atatgaatat gcattaatag cagatagtaa tagtaacgcc gctgcatttt taaaaagcaa 2040 ctgccaggca aaatacctaa aagattgtgc agttatgtgt aggcattata aaagagcaca 2100 aaaaagacaa atgagtatgt cacagtggat aaaatggaga tgtgataaaa tagaagaggg 2160 gggagattgg aaacccatag tacaattttt aagatatcaa ggagtagaat ttataacgtt 2220 tttatgtgca ttaaaagatt ttttaaaagg taccccaaaa agaaattgca ttgtgctgtg 2280 tgggccagca aatacaggca agtcatactt tggaatgagc ctgctacatt ttttacaagg 2340 aactgtaatt tcacatgtaa attcaaatag tcacttttgg ctagaacctt taacagatcg 2400 taaattagct atgctagacg atgcaacaga tagttgttgg acatattttg atacatatat 2460 gcgaaatgct ttggatggca atcctataag tgtagataga aagcataggc acctagtaca 2520 aattaaatgt ccaccaatgc ttattacatc aaatacaaat ccagttacag ataacaggtg 2580 gccatattta aatagcagat taatggtatt taaatttcca aacaaattgc catttgacaa 2640 aaatagaaat ccagtatata caattaatga cagaaactgg aaatgttttt ttgaaaggac 2700 gtggtgcaga ttagatttga acgaggaaga ggaagatgca gacagtgatg gacacccttt 2760 cgcagcgttt aagtgtgtta caggatcaaa tattagaaca ttatgaaaac gatagtaaag 2820 acattaatga acacataaac tattggaaac tggtgcgtat ggaaaatgta attttatttg 2880 cagcaagaga gaacaatata catacattaa accaccaggt ggtgccaacg tttttggtgt 2940 ctaaaaacaa ggcatgtgaa gctattgaac tgcagtcaaa ccgtacttcc actgtaatgc 3000 cctgtttttt aaaacatttt ttaggtgctg tttgccatag ttcttggcat gtttcttgca 3060 ttgtccattg ctcattttta aactcagttt gtgccaaact ctctaacgcc atctgcagca 3120 aggaaaacac aatgcattac acaagctgga catttatata ttatgtaaat gatgtaggac 3180 agtggtgtaa aaccacagga aatgtggact tttggggact atattataaa gtggaagagg 3240 aacaggtgta ctatgtaaaa tttatacatg atgccaaaaa atatgggact acagacaagt 3300 gggaagtgca ttataatggc aaggttattg attgttatga ctctatgtgc agtaccagtg 3360 acgagcaagt atccactgct ggatcttctg agcaactatc atacccctcc gcaacgcccc 3420 ccgaagccac gtacttgggc ccccaaacgt ggaaccgtca gacgaagact ggaaagcgac 3480 caagacagtg tggatacaca cagcaccctc agtctaccag cgtgtcagtg gactactgtg 3540 acaacccagt cgtccgtttg catccaggca acaacccgcg acggcacatc ccttgcagta 3600 acactacgcc tataatacac ttaaaaggtg acaaaaatgg ccttaagtgt ttaaggtata 3660 gattaagaaa agtacactgg ttatttgaaa atatttcctc tacctggcat tggacaggaa 3720 acagaggatc agccaaaaca ggcattttaa cattaacata tacaagcgaa acacaacgca 3780 atgaattttt agatactgta aaaattccta atagtgtaca aatacatgtt gggtatatga 3840 gtgtgtaatg gttgttatgc aaatgtaaca caagccaata ctgctgctat attgtatagc 3900 tgaggaaatg ataacccttg tatttgtgtg ttgtgtttgt gtttgcttgt gtgtgtgttg 3960 caatgtcccg cttctgcaat ctgtctatat gtgtgcatat acatggttac tagtatttgt 4020 gtatattgtg gttatcacct cctcatatga gtgtttttta ctatatatat tgttttttat 4080 aattccactg ttactactat atgcccatgc aatactgtcc atacaataat tgctgtatat 4140 tgtaaattac attgcactgt attgtacagt atattttaaa cacattatta tttttgttag 4200 gtgttggttt tgttacattt ataataaaac atggtttccc atcgtgctgc tcgtcgtaaa 4260 cgtgcctcag caacagactt atataaaact tgcaagcagg caggtacatg cccttctgat 4320 gttattaata aagttgaagg tacaacttta gctgataaaa tattgcagtg gaccagccta 4380 ggaatatttt taggtggact aggtattggt actggatctg gtaccggtgg cagaacaggg 4440 tacatacctt taggggggcg tacaaacact atagtagatg tatcgcctgc taaaccacca 4500 gtagttattg aacctgttgg acctacagat ccatctatag ttacattagt tgaggattct 4560 agtgttataa catctggagc ccctgcccca acatttacag gtacttcagg atttgaaata 4620 tctacctcta gtacaacaac accagctgtt ttggatataa ccccaacctc ttctgttcaa 4680 attagtagct ctagttttat aaatcctgca tttacagacc cttctgtcat tgaggttccc 4740 caaacaggtg aaatttctgg taatatatta attagtaccc ctacctctgg tgcacatggc 4800 tatgaagaaa ttccaatgca aacgtttgct acggaaggta ctggtttgga acccattagc 4860 agtaccccca atccaacagt acgtcgtgtg gctggaccta gattgtacag tagggctaat 4920 caacaagttc gggtgtctaa cgctgacttt ttaacacgtc catccacatt tgttacatat 4980 gataaccctg cttatgatcc aattgatact acattaactt ttgacccctc atcagaggtt 5040 ccagacccgg actttatgga tatagttcgt ttgcataggc ctgcattaac atccagacgc 5100 agcactgtaa ggtttagtag gctaggacaa cgggcaacca tgtttacccg tagtggtaaa 5160 caaattgggg cccgtgtaca tttttatcat gatataagcc ctataccaca tgctgaagat 5220 attgaattgc aacctcttgt ttcttcccag gctgctactg atgatatata tgatatatat 5280 gcagatatta cagatgaagc acctactagt actgccaaca ctgcatttac aattcctaaa 5340 tcttcttttc aaagtttgtc attaacacgg tcggcatcta gcaccttttc aaatgtaact 5400 gttcctttgg ctactgcctg ggatgttcct gtaaatacag gacccgatat agttttacct 5460 aatactaata ttgttgaacc cacttattct actacaccct ttaccaccat acagtctatt 5520 aatatagaag gcacaaatta ttttttatgg cctatatatt attttttacc tcgtaaacgt 5580 aaacgtgttc cctatttttt tacagatggc tctatggcgt tctagtgaca acaaggtgta 5640 tctacctcca ccttcggtag ctaaggttgt cagcactgat gagtatgtca cccgtaccag 5700 tattttctac cacgcaggca gttccagact tcttacagtt ggacatccat attttaaagt 5760 acctaaaggt ggtaatggta gacaggatgt tcctaaggtg tctgcatatc aatacagagt 5820 atttagggtt aagttacctg atcccaataa atttggcctt ccagataaca cagtatatga 5880 tcctaactct caacgcttgg tctgggcctg tgtaggtgtt gaaatcggtc ggggccaacc 5940 tttaggggta ggactcagtg gtcatccatt atataataaa ttggatgaca ctgaaaactc 6000 tcatgtagca tctgctgttg ataccaaaga tacacgtgat aatgtatctg tggattataa 6060 acaaactcag ctgtgtatta ttggctgtgt acctgccatt ggagaacact ggacaaaggg 6120 cactgcttgt aagcctacta ctgtggttca gggcgattgt cctccactag aattaataaa 6180 tacaccaatt gaagatggtg atatggtaga cacaggatat ggggctatgg actttaaatt 6240 gttgcaggat aacaaaagtg aagtaccatt ggatatttgt cagtctattt gtaaatatcc 6300 tgattattta caaatgtcag cagatgctta tggagacagt atgttttttt gtttaaggcg 6360 agaacaggtt tttgccagac atttttggaa tagatctggt actatgggtg atcaacttcc 6420 tgaatcacta tatattaaag gtactgacat acgtgccaac ccaggcagtt atttatattc 6480 cccttcccca agtgggtctg tggttacttc tgattcacaa ttatttaata aaccatattg 6540 gctgcacaag gctcagggtt taaacaatgg tatatgttgg cacaatcaat tgtttttaac 6600 agttgtagat actactcgca gcaccaatct ttctgtgtgt gcttctacta cttcttctat 6660 tcctaatgta tacacaccta ccagttttaa agaatatgcc agacatgtgg aggaatttga 6720 tttgcagttt atatttcaac tgtgtaaaat aacattaact acagaggtaa tgtcatacat 6780 tcataatatg aataccacta ttttggagga ttggaatttt ggtgttacac cacctcctac 6840 tgctagttta gttgacacat accgttttgt tcaatctgct gctgtaactt gtcaaaagga 6900 caccgcaccg ccagttaaac aggaccctta tgacaaacta aagttttggc ctgtagatct 6960 taaggaaagg ttttctgcag atcttgatca gtttcctttg ggacgtaaat ttttattgca 7020 attaggagct agacctaagc ccactatagg cccacgcaaa cgtgcagcgc ctgcccctac 7080 ctctacccca tcaccaaaac gtgttaagcg tcgcaagtct tccagaaaat agtgttgttt 7140 gttatgtgtt tgtatgtgtg catgttgtat gttttgtatt gtttgcctgt ttgtatgttg 7200 tgtatatgta catgtttgtt tgtctgctgt atgtgtgtat ttgtttttgt acataataaa 7260 gtatgcatga cagtttcatg tgtggttgca cccaatgagt aaggtactgt ccctttattg 7320 tttctttgtc cttattacac attattacac attgccctac ttacataggt gtgtttgttc 7380 cttcattttg tcctgaatgt ccagttttgc atttgcacat tatatggcgt ccattttatc 7440 ctttaaatcc tccattttgc tgtgcaaccg ttttcggtta ccttggttta accttacctt 7500 tttgaacaat taatctgttt aaacatcagc aaaacagtta atccccatct tgtttcctcc 7560 tacacgccta gactactaac acaacttaca aacgccaaat agttagtcat catcctgtcc 7620 aggtgcactc taacaatact tgcataactt tggtggcgcc cttgttaata aaacagcttt 7680 taggcacata ttttcactgt ttttactact ttaattgcat aattggcttg caaaactact 7740 gtgcaatcca agaatgtgtc tataatttat tgtaaaaaac atgactaagg tttttgtcat 7800 tgttaagcaa ccgaaaaagg tcgggcaagt acatgcacac tttctactta ttacttttta 7860 caatcatagt aataaaaaag ggtgtaaccg aaaacg 7896