ID HPV55 STANDARD; ds-DNA; VRL; 7822 bp. XX DE Human papillomavirus type 55 (HPV55), complete genome. XX AC U31791 XX DT 04-JUL-1995 XX OS Human papillomavirus type 55 DNA. OC Human papillomavirus type 55;Viridae; ds-DNA nonenveloped viruses; OC Papovaviridae;Papillomavirus. XX RN [1] RP 1 - 7822 RA Delius,H; RT "Direct Submission;" RL Unpublished. XX XX Created by HIV database on 1-NOV-1995 from GenBank: U31791. XX XX XX FT KEY Location/Qualifiers FT CDS 102..554 FT /note="ORF E6 from bp 69 to 554" FT /product="transforming protein" FT /gene="E6" FT /note="putative" FT /codon_start=1 FT /translation="MESANASTAAQSIDQLCKECNIPMHHLQILCVFCRKTLTTAEVY FT SFAYKQLYVVFRGNFPFAACAICLELQGKVNQFRHFDFAGYALTVEEETKQSILDVFI FT RCYLCHKPLCHVEKVRHILEKARFIKLQNTWKGRCFHCWTSCMETILP" FT CDS 530..823 FT /note="ORF E7 from bp 485 to 823" FT /product="transforming protein" FT /gene="E7" FT /note="putative" FT /codon_start=1 FT /translation="MHGNYPTLKEIVLELDPPDPVGLHCNEQLDSSEDEVDELATQAT FT QDVTQPYQIVTTCGTCNRNVRLVVQCTGTDICQLHTLLLGSLEILCPVCAPKN" FT CDS 829..2763 FT /note="ORF E1 from bp 712 to 2763" FT /product="replication protein" FT /gene="E1" FT /note="putative" FT /codon_start=1 FT /translation="MADNTGTEGTGCSGWFLVEAIVEKTTGQQISEDEDEAVDDSGLD FT MVDFIDDRPITHNSMEAQALLNEQEADAHYAAVQDLKRKYLGSPYVSPLSNIKEAVEC FT DISPRLDAIKLSRQPKKVKRRLFERPELTDSGYGNIDVEAETQVERNGEPEDCGGGGQ FT GRDTEEGVEQVETEVQTHSDTQLHTETTRVVELLKCKNIRATLLGKFKDCYGLSYTDL FT IRQFKSDKTTCGDWVIAAFGVHHSVSEAFQNLIQPVTTYSHIQWLTNAWGMVLLALLR FT FKVNKNRCTVARMMATRLNIPEDHMLIEPPKIQSGVAALYWFRSSISNASIVTGETPE FT WITRQTIVEHGLGDNQFKLTEMVQWAYDNDFCEESEIAFEYAQRADIDANARAFLNSN FT CQAKYVKDCATMCKHYKTAEMKKMSMKQWIKFRSSKYEETGNWKPIVQFLRYQNIEFI FT PFLTKLKMWLHGTPKKNCIAIVGPPDTGKSCFCMSLIKFLGGTVISYVNSSSHFWLQP FT LCNAKVALLDDVTQSCWVYMDTYMRNLLDGNPMTIDRKHKSLALIKCPPLIVTSNIDI FT TKEDKYKYLCSRVTLFTFPNPFPFDRNGNALYDLCESNWKCFFARLSTSLDIQTSEDE FT DDGDNSQAFRCVPGTVVRTV" FT CDS 2705..3841 FT /note="ORF E2 from bp 2678 to 3841" FT /product="regulatory protein" FT /gene="E2" FT /note="putative" FT /codon_start=1 FT /translation="METIAKHLDVCQEQLLELYEENSNNLTKHIQHWKCIRYECVLLH FT KAKQMGLNHIGMQVVPALTVSQTKGHQAIEMQMTLETLLNSDYGMEPWTLQDTSREMW FT LTAPKYCFKKQGQTVEVKYDCNADNIMEYVSWKYIYVHDTDKWVKVTGHIDYKGLYYV FT HGGHKTYYTNFEKEAKKYGNSLQWEVCIGSSVICSPASISSTVQDVSIAGPASHTSSS FT TTTTLAQASPALPTCTSEERVDPPPCKRPRGPTTNTNNARDTVSVRHSDSVDSTNNNI FT YPNSYNSNKGRDNNFCTATPVVQLQGDPNCLKCLRYRLHAKHKTLFVAASSTWRWTCS FT DTSSKHALVTLTYVNEEQREQFLNTVRLPPTVTYKVGYMSLQLL" FT CDS <3162..3596 FT /note="ORF E4 from bp 3162 to 3596" FT /gene="E4" FT /note="putative" FT /codon_start=1 FT /translation="TIKGCIMYMAGIKPIIPILKKRLKNMGTHYNGRSVLVAVSYVLL FT HLYLVLCKTYPLLGLLHTPPPPPPPPLHRPHLHCPPAPPRNAWTRRHVNDPEDPPQTP FT TTPGTPSVSDTATPWTVQTTTSTLTVTTVTKDGTTIFVQLRL" FT CDS 3877..4152 FT /note="ORF E5 from bp 3862 to 4152" FT /gene="E5" FT /note="putative" FT /codon_start=1 FT /translation="MEHIPIDGTIGATSTSLLPVVLALFVCFVSIVLIIYISDFIVYT FT SILVLTLLLYMLLWLLLTTALQFYVLTLCVCFFPAWYLHFYIVHTQE" FT CDS 4325..5707 FT /note="ORF L2 from bp 4289 to 5707" FT /product="minor capsid protein" FT /gene="L2" FT /note="putative" FT /codon_start=1 FT /translation="MAHSRARRRKRASATQLYQTCKAAGTCPSDIIPKVEHNTIADQI FT LKWGSLGVFFGGLGIGTGSGTGGRTGYIPLQSTPRPEIPSGPTTRPPILVDTVAPGDP FT SIVSLVEESAIINSGAPELVPPSHGGFEITTSESTTPAILDVSVTTHTTSTSVFRNPS FT FADPSVVQSQPAVEAGGHILISTSTISSHPVEEIPLDTFIVSSSDSNPASSTPIPASG FT ARPRIGLYSKALHQVQVTDPAFLSSPQRLITFDNPAYEGEDVSLEFAHNTIHQPPDDA FT FMDIIRLHRPAIQSRRGRVRFSRIGQRGSMYTRSGKHIGGRIHFYQDISPISAAAEEI FT ELHPLVATAHDTSLFDIYAEPDPDFTEEPVPLSFSTSTPFQRSSVSATPWGNTTVPLS FT LPGDMFVQPGPDIIFPTASTTTPYSPVTPALPTGPVFISGATFYLYPAWYFARKRRKR FT VSLFFADVAA" FT CDS 5694..7199 FT /note="ORF L1 from bp 5616 to 7199" FT /product="major capsid protein" FT /gene="L1" FT /note="putative" FT /codon_start=1 FT /translation="MWRPSENQVYVPPPAPVSKVITTDAYVKRTNIVYHASSSRLLAV FT GNPYFAIRPANKTLVPKVSGFQYRVFKVVLPDPNKFALPDTSIYDPTTQRLVWACIGL FT EVGRGQPLGVGISGHPLLNKLDDVENSASYAASPGQDNRVNVAMDYKQTQLCLVGCAP FT PLGEHWGKGKPCNNGSVNSGDCPPLELITSVIEDGDMVDTGFGAMNFAELQPNKSDVP FT LDICTATCKYPDYLQMAADPYGDRLFFYLRKEQMFARHFFNRAGTVGEDIPQDLVFKG FT ATKSTVPNAIYFNTPSGSLVSSETQLFNKPFWLQRAQGHNNGICWGNQLFVTVVDTTR FT STNMTICAATTQSPSTTYNSTEYKQYMRHVEEFDLQFMFQLCSITLTAEVMAYLHTMN FT PGILEQWNFGLSPPPNGTLEDKYRYVQSQAITCQKPPPEKAKQDPYAKLSFWEVDLRE FT KFSSELDQYPLGRKFLLQTGVQARSSVRVGRKRPASAATSSSSKPKRSRKK" XX SQ SEQUENCE 7822 bp; 2400 a; 1526 c; 1658 g; 2238 t; taataataat gtaagcttta gaaaagagga gggaccgaat tcggttccaa ccgaaaacgg 60 ttatataaaa accagcccaa aaattaagca agcggggcat aatggaaagt gcaaatgcct 120 ccacggctgc acaaagtata gaccagttgt gcaaggagtg caacattcct atgcaccatt 180 tgcaaatttt atgcgtgttt tgcagaaaaa ccttgaccac tgcagaggtt tattcattcg 240 catataaaca gttatatgta gtgtttcgag gtaactttcc atttgcagcc tgtgccattt 300 gtttagaact acaaggtaag gtcaatcaat ttaggcattt tgacttcgcg ggatatgcat 360 taacagtgga agaagagaca aagcagtcaa ttttggacgt gttcatacgc tgttatttgt 420 gccacaaacc attgtgccac gtggaaaagg tgcgccacat attggagaag gcgcgattta 480 ttaaattaca gaatacctgg aagggtcgct gcttccattg ctggacatca tgcatggaaa 540 ctatcctacc ttgaaggaaa ttgttttaga gctggatcct cctgaccctg taggcctaca 600 ttgcaatgag caattagaca gctcagagga tgaggtggat gaactagcca cgcaggccac 660 gcaagacgtt acacagcctt accaaatagt aaccacctgt ggtacatgta accggaacgt 720 tcggctggtt gtgcagtgca caggaacaga catctgtcaa ctacatacgc ttctgctggg 780 ttcactggaa atactgtgtc ctgtgtgtgc gcccaaaaac taacaacgat ggcagacaat 840 acaggtacag aggggacggg gtgctcagga tggttcttag tagaggctat agtggagaaa 900 acaactgggc aacaaatatc tgaggatgag gatgaggcag tggacgatag tgggttggat 960 atggtggact ttatagatga caggcctatt acacacaatt ccatggaagc acaggcattg 1020 ttaaacgagc aggaggcgga tgctcattat gcggctgtgc aggacctaaa acgaaagtat 1080 ttaggtagtc catatgtgag tcctttaagc aatattaagg aggcagtgga gtgtgacatt 1140 agcccacggt tggatgccat aaaattaagt agacaaccca aaaaggtaaa gcggcggctg 1200 tttgaaagac cagaattaac ggacagtgga tatggcaata ttgatgtgga agctgaaacg 1260 caggtagaga gaaatggcga accggaagat tgtgggggag gtggacaagg aagggacaca 1320 gaggaggggg tggaacaggt ggaaacggaa gtgcagacac atagcgacac acagctgcac 1380 accgagacca cgcgggtagt agaactgtta aaatgtaaga atatacgggc tacactgctt 1440 ggtaagttta aggactgtta tgggttatca tatacagatt taattagaca atttaaaagt 1500 gacaagacaa catgtgggga ctgggtgatt gcagcatttg gggtgcacca tagtgtatcg 1560 gaggcgtttc aaaatttaat acaaccagta acaacatata gccacataca atggcttaca 1620 aatgcatggg gaatggtatt actggcatta ttacggttta aggtaaataa aaacagatgt 1680 acagtggcac gcatgatggc aacacgttta aatatacctg aggatcatat gttaattgaa 1740 cctcctaaaa tacaaagcgg tgttgcagca ttatattggt ttagaagtag tatatccaat 1800 gccagtatag ttactggaga aacgcctgaa tggataacaa ggcaaaccat tgtagaacat 1860 gggcttggtg acaaccaatt caaattaaca gaaatggtgc aatgggcata tgataatgac 1920 ttttgtgagg aaagtgaaat tgcatttgaa tatgcacaac gtgcagatat agatgcaaat 1980 gcaagagcat ttttaaatag taattgtcag gcaaaatatg taaaagattg tgctacaatg 2040 tgcaagcact ataaaactgc agaaatgaaa aaaatgagta tgaaacagtg gataaaattt 2100 aggagcagta aatatgaaga aacaggcaat tggaaaccaa tagttcaatt tttaagatat 2160 caaaatattg aattcattcc atttttaact aaattgaaaa tgtggctgca tgggacacct 2220 aaaaaaaact gtattgcaat tgtaggacca ccagacacag ggaaatcgtg tttctgtatg 2280 agtttaatta aatttttagg aggcactgta attagttatg taaactctag tagtcacttt 2340 tggctacagc ccctatgcaa tgcaaaagta gcattgttag acgatgtaac acaatcgtgc 2400 tgggtatata tggatacata catgagaaac ctattagatg gaaaccctat gactattgac 2460 agaaaacaca aatcattagc attaataaaa tgtccgccat taatagtaac atctaacata 2520 gacattacta aagaagataa atataaatat ttatgtagca gggtaacatt atttacattt 2580 ccaaatccat tcccctttga cagaaatggg aatgcactat atgacctgtg tgaatcaaac 2640 tggaaatgtt tctttgcaag attatcaaca agtctagata tacaaacatc tgaggacgag 2700 gacgatggag acaatagcca agcatttaga tgtgtgccag gaacagttgt tagaactgta 2760 tgaagaaaat agtaataacc ttacaaaaca tatacaacat tggaaatgca taagatatga 2820 atgtgtgtta ttacacaaag caaagcaaat gggcctaaac cacattggaa tgcaagtggt 2880 gccagcatta acagtgtcac agacaaaggg acaccaggcc attgaaatgc aaatgacatt 2940 agaaacacta ttaaactctg actatggtat ggaaccatgg acattgcaag acacaagtcg 3000 tgaaatgtgg ttaacagcac ccaaatactg ttttaaaaaa cagggacaaa ctgtggaagt 3060 aaaatatgac tgcaatgcag acaacattat ggagtatgta tcgtggaaat atatttatgt 3120 gcatgacaca gacaaatggg taaaagtgac aggacacata gactataaag ggttgtatta 3180 tgtacatggc gggcataaaa cctattatac caattttgaa aaagaggcta aaaaatatgg 3240 gaactcatta caatgggagg tctgtattgg tagcagtgtc atatgttctc ctgcatctat 3300 atctagtact gtgcaagacg tatccattgc tgggcctgct tcacacacct cctcctccac 3360 caccaccacc cttgcacagg cctcacctgc actgcccacc tgcacctccg aggaacgcgt 3420 ggacccgccg ccatgtaaac gaccccgagg acccaccaca aacaccaaca acgccaggga 3480 caccgtcagt gtccgacaca gcgactccgt ggacagtaca aacaacaaca tctaccctaa 3540 cagttacaac agtaacaaag gacgggacaa caatttttgt acagctacgc ctgtagttca 3600 attacaaggt gatcctaatt gtttaaagtg tttaagatat agattacatg caaagcataa 3660 aacattgttt gtagcagcat cgtccacatg gcgctggaca tgttcagata cttccagtaa 3720 acatgcactg gtaacattaa catatgttaa tgaagagcaa cgtgagcagt ttttaaacac 3780 tgtacggtta cctccaacag ttacatataa agttggatat atgtctttac aattgttata 3840 atgcttattg tatatattta attgtataaa ttgtacatgg aacatatacc tatagatggt 3900 actatagggg caaccagcac atcattactg ccagttgtac ttgccctgtt tgtatgtttt 3960 gttagcattg tattaattat ttacatttct gattttatag tgtacacatc tatattggta 4020 ctaaccttac tgctatatat gttactttgg cttttactaa ccactgccct gcaattttat 4080 gtactaacac tgtgtgtctg cttttttcct gcgtggtatc tacatttcta tattgtacat 4140 acacaagaat aactattaca atgctaacat gtacctttga tgatggtgat acatggttgt 4200 tattatggtt tatattaacc ttaattgtta ccattgtggc attgttatta atgcacttta 4260 aatctgtacc atgtgttaca tgcagtaaat aagtgtttgt aaacgtggtg tggttggtat 4320 aattatggca cacagcaggg cacgtagacg taaacgtgcc tcagctaccc aattatatca 4380 aacctgtaag gctgcaggca cctgtccatc tgatattatt cctaaagttg aacataacac 4440 tattgctgat caaatattaa agtggggcag tttgggtgtt ttttttggag gactgggaat 4500 tggtacaggc tctggcacag gtggtcgaac aggatatatt cctttgcaat ctaccccacg 4560 tcctgagatt ccctctggcc ctaccacaag gccacctata cttgttgata cagttgcacc 4620 tggtgacccc tctattgttt ctttggttga agaatctgct attataaatt caggagctcc 4680 ggaattggtc cctccgtccc atggtggctt tgagattact acatcagaat ccaccacacc 4740 agccatatta gatgtgtctg ttacaacaca tactacctct acaagtgtat ttagaaaccc 4800 tagctttgca gacccatctg ttgtacagtc ccagccagcc gttgaagctg gtggacacat 4860 acttatctct acctcaacca tatcgtccca ccctgtagag gaaataccat tagatacatt 4920 tatagtatct tcttcagata gtaatcctgc atctagcact cccattccag catctggtgc 4980 acgaccacgt attggcctat acagtaaggc tttacaccag gtacaggtaa cggatcccgc 5040 ctttttgtcc tctccccaac gccttataac atttgataat cctgcatatg aaggggaaga 5100 tgttagtttg gagtttgcac acaatactat acatcagcct ccagatgatg cgtttatgga 5160 tattatacga ttgcacagac cagctataca atctcggcgt ggtcgtgtgc ggtttagtag 5220 aataggacaa cgggggtcta tgtacacacg tagtggtaaa catattggtg gcaggataca 5280 tttctatcaa gacatatctc ctatatctgc tgctgcagaa gaaatagaac tgcaccctct 5340 tgtggccact gcacacgata ctagcctgtt tgatatttat gcagaacctg accctgactt 5400 tacagaagaa cctgttccat tgtctttttc cacctccacg ccctttcagc ggtcttctgt 5460 gtcagccacc ccatggggca atactactgt ccctctttca ttacctggtg acatgtttgt 5520 acagcctggt cctgacataa tatttcctac tgcatccact acaactccct atagtcctgt 5580 cactcctgct ttacctacag gtcctgtttt tataagtggt gctacatttt atttatatcc 5640 tgcatggtat tttgcacgca aacgccgtaa acgtgtttcc ttgttttttg cagatgtggc 5700 ggcctagtga aaaccaggta tatgtgcctc ctcccgcccc agtatccaaa gtaataacta 5760 cggatgccta tgtcaaacgc accaacatag tttaccatgc tagcagttct agacttcttg 5820 ctgtaggcaa cccttatttt gccatacgac cagcaaacaa gacacttgtg cctaaagttt 5880 caggatttca atatagggtt tttaaggtgg tattgccaga ccctaataaa tttgcattac 5940 ctgacacatc tatatatgac cctactacgc aacgcctggt atgggcctgc attgggttgg 6000 aagtgggtag aggccagccc ctgggtgttg gtattagtgg gcatccatta ttaaacaaat 6060 tggatgatgt ggaaaattct gctagttatg cagccagtcc aggtcaggac aacagggtaa 6120 atgtggccat ggactataaa caaacacaat tatgtttagt tggctgtgca cccccattgg 6180 gggagcattg gggtaagggc aagccatgta ataatggtag tgtaaatagc ggagactgcc 6240 ctcccctgga attaattact agtgttatcg aagatggtga tatggtggac actggttttg 6300 gagccatgaa tttcgctgaa ttgcaaccaa ataaatctga tgttccctta gatatatgca 6360 ctgctacatg caaatatcct gactatttac aaatggctgc tgatccatat ggggacagat 6420 tgttttttta cttacgaaag gaacaaatgt ttgcaagaca tttttttaat agggcgggaa 6480 cggttggaga ggacattcca caggatttgg tttttaaagg tgctactaaa agtacagttc 6540 ctaatgccat atactttaat acacccagtg ggtctcttgt atcttctgaa acccaattat 6600 ttaataagcc tttttggttg caaagggcgc agggccacaa taatggtatt tgttggggga 6660 atcagttatt tgttactgtt gtagatacta cacgtagtac aaacatgaca atatgtgctg 6720 ctacaactca gtctccatct acaacatata atagtacaga atataaacaa tacatgcgac 6780 atgttgagga gtttgactta cagtttatgt ttcaattatg tagtattacc ttaactgctg 6840 aggtaatggc ctatttacat accatgaatc ctggtatttt ggaacagtgg aactttgggt 6900 tgtcgccacc cccaaatggt accttagaag acaaatacag atatgtgcag tcacaggcca 6960 ttacatgtca aaagcctccc cctgaaaagg caaagcagga cccctatgca aaattaagtt 7020 tttgggaggt agatctcaga gaaaagtttt ctagtgagtt agatcaatat ccccttggta 7080 ggaaattttt attgcaaacg ggtgtgcagg cccggtcctc tgttcgtgtg ggtagaaaac 7140 gtcctgcatc tgcagccact tcatcctcca gtaaacccaa acggtctagg aagaagtagt 7200 atgtgttatt gttttgtttg tgtatgtgtg tcatatgtta ttgtttgtta tatgtgttgt 7260 attgtatata tgttgtatgt ctatgttgtg taatgttgta tgtatgcatg tgtgtgttgt 7320 atttaataaa cttaatctgt gtgtcctgtt ccaccccatg agtaagtgtt gtagtattgt 7380 gtgttatgtc tggtgtatac aatatacaac atatgtacag ccatgttgtt ttataaaaca 7440 catttttaaa catattcctc cattttgggt gcaaccgttt tcggttgtta ctcatcaccc 7500 acatcctgta accaatttgt tgtagcaagc aaaatattta atcttatcta tagttgccaa 7560 aactttacta tgttactaag tacacacctg gcgcacagct aggcgcggtt tggcaactac 7620 acaatacatt cctaatctat ataacactgc tgtctacttg tttaacaatc gtgtgctggt 7680 agccaacttt taaaagcatt tttggctact aacactacat ttttgtacag ttactgttag 7740 ttttataaaa tgagtaacct aaggtcacac acctgcaacc ggtatcggtt gaaacacacc 7800 ctgtacattt ccttattata gt 7822