ID HPV54 STANDARD; ds-DNA; VRL; 7759 bp. XX DE Human papillomavirus type 54. XX AC L00000 XX DT 04-SEP-1995 XX OS Human papillomavirus DNA. OC Human papillomavirus;Viridae; ds-DNA non-enveloped viruses; OC Papovaviridae;Papillomavirus XX RN [1] RP 1 - 7759 RA Delius,H; RT "Direct Submission;" RL Unpublished (1995). XX XX Created by HIV database on 1-NOV-1995 from GenBank: L00000. XX XX HPV-54 was first isolated from a patient with condyloma acuminata. XX FT KEY Location/Qualifiers FTsource 1..7759 FT /organism="Human papillomavirus type 54" FT CDS 102..536 FT /note="putative" FT /note="ORF E6 from bp 7708 to 536" FT /product="transforming protein" FT /gene="E6" FT /note="putative" FT /codon_start=1 FT /translation="MSATEPHTDQPRTLADLCKVCNIPMHSLQLPCAFCKKTVCTAEI FT YAFQYKDLFVVWRHGFPHAACALCLELHGQINYRRHRDRACLWETVEQECGKPLEEIF FT IRCWLCHKPLCNVEKQRHVDYNRRFHCVRGYWKGRCLHCWKP" FT CDS 536..823 FT /note="putative" FT /note="ORF E7 from bp 512 to 823" FT /product="transforming protein" FT /gene="E7" FT /note="putative" FT /codon_start=1 FT /translation="MHGNVATIEDIVLDLKPEPFDLYCREQLEDSDAEDETAVTQPDK FT QAFKVLSQCGGVCCKTVRLCVYSTHTGIRVLQELLHQDALQIVCPTCASRL" FT CDS 828..2729 FT /note="putative" FT /note="ORF E1 from bp 795 to 2729" FT /product="replication protein" FT /gene="E1" FT /note="putative" FT /codon_start=1 FT /translation="MADNQGTEEEGTGCNGWFFVEAIVERKTGDIISDDEPEDVEDSG FT LDMVDFIDNSVSQVEGQENPQALLHAQQLQADVEAVQQLKRKYIGSPYVSPVANSEPC FT VEKDLSPRLGAISLGRRSAKAKRRLFDKAQPPPNGHTDVEAAVEVNTEGTDETETDQV FT QTVSGETTTDSLGRQQITELIHNTNIRVALFGMFKDLYGLSFMDLARPFKSDKTVCTD FT WVIAAFGIYHGITDGFKTLLEPHCLYGHIQWLTCRWGMVLLLLTRFKCGKNRLTVSKC FT LGMLLNIPETQMLIDPPKLRTPAAALYWYRQGLSNASEIFGTPPEWLARQTVIEYSLA FT DSQFDLSKMVQWAYDHNYIDDSIIALEYAKLADIDENAAAFLGSNCQAKYVKDCGTMC FT RHYIRAQKMQMTMSQWIKHRCDLVEEEGEWKEIVRFLRYQHVDFISFMIALKQFLQGI FT PKHNCILLYGPPDTGKSNFAMSLISFLGGVVLSYVNSSSHFWLEPLADAKIAMLDDAT FT TQCWNYMDIYMRNALDGNPMCFDRKHRAMVQTKCPPLIVTSNINASTDDRWRYLHSRV FT KCFCFPNRFPFDSNGNPVYDLSNKNWKSFFKRSWSRLALNDNDNEEEENGDPSNTFRC FT VPGKASRPI" FT CDS 2671..3774 FT /note="putative" FT /note="ORF E2 from bp 2644 to 3774" FT /product="regulatory protein" FT /gene="E2" FT /note="putative" FT /codon_start=1 FT /translation="METLATRLDVCQERLLDLYEKDSNKLEDQIEHWKCIRLECALQY FT KAREMGYKVLQHQALPALAVSKGKGHKAIELQLALETLQKTVYSTEPWTLQDTCLERW FT NAPPTGCLKRRGQTVDVIFDGHQDNTMQYVMWGDIYYQNCDGEGWTKVCSNIDAMGIY FT YMDAEHKVYYVDFKKEASKYGEYGQWEVRMGSSIIFSPASVSSTEEALSISSTGTAEH FT TRPANSTPRTDNSTKAIPCTPPPRKRARVYSTDQQPHSTSDPVGCDNDRHISDDNNKN FT QGRHTSSGDTTPIVHFKGEPNTLKCFRQRIQKYKHLFEQASSTWHWACVPGTTKNRGI FT VTLTYSSVEQRQQFLVTVRIPPSISMSLGVMSL" FT CDS 3134..3538 FT /note="putative" FT /note="ORF E4 from bp 3134 to 3538" FT /gene="E4" FT /note="putative" FT /codon_start=1 FT /translation="MQWVFIIWMQNTKCIMWILKRKHLSMGNMDSGRCVWAAASFFLL FT HLYLVPKRHCQYPLLALLNTPDQPIPHHVPTTPQKQSRARRRLENELESTAQTSNHTA FT PQTPWAVTTTGTSVTITTRTKDGTQVVVTLHL" FT CDS 4215..5627 FT /note="putative" FT /note="ORF L2 from bp 4200 to 5627" FT /product="minor capsid protein" FT /gene="L2" FT /note="putative" FT /codon_start=1 FT /translation="MAKARAPRRKRASATQLYQTCKASGTCPSDVIPKVEGTTIADQI FT LRWGSMGVFFGGLGIGTGSGTGGRTGYIPLGRPSTTLEPGPPVRPAGAVETVAPSDPS FT IVSLVEESSVVDVGAPTPTIPSQGGFEIATSSDATPAILDVTSTTTPIRVSITSHDNP FT IYTEPSLLDPPPPVQMDGRVLVSTSTLQSSTAENIPMDTFIIMQDHIGTTTSTPIPRP FT PARPRLGLYSRALQQVPVQDPAFLQQPSSLITYDNPVYEGNPDVTLHFEQPTIHNAPD FT PAFMDIFALHRPALTTRRGVVRYSRVGDRATLHTRSGLQLKPRVHFFQDLSPIAHVPE FT EIELHPLISANNTSINNGLYSDIYDVYADTDFADTGGFSSSTVSHSSVQTALQTTSIP FT SQYGNTTVPLTASSPYTPIPTSFRPSSGHTPFVPARPIFPQTPIAVNGGDFYLHPSYT FT YVRKRRKRFPYFLADGYVAA" FT CDS 5614..7107 FT /note="putative" FT /note="ORF L1 from bp 5422 to 7107" FT /product="major capsid protein" FT /gene="L1" FT /note="putative" FT /codon_start=1 FT /translation="MWRPSENKVYLPPTPVSKVVSTDEYVTRTSIYYHASSSRLLAVG FT HPYFKVQKTNNKQSIPKVSGYQYRVFRVQLPDPNKFGLPDPSLYNPETQRLVWACTGV FT EVGRGQPLGLGLSGHPLLNKLDDTENAPKYVGAGADNRENVSMDYKQTQLCILGCTPP FT IGEHWAKGNLCTPNTLAAGDCPPLELVNSYIQDGDMVDIGFGAMDFKTLQTSKSEVPL FT DVATSICKYPDYLKMAAEAYGDSLFFYLRREQMFVRHMLNRAGTMGEPVPNDLYIKKS FT SGNLDSSIYAATPSGSMVTSEYQIFNKPYWLQRAQGQNNGICWGNQVFLTVVDTTRST FT NLTLCATASTQDSFNNSDFREYIRHVEEYDLQFIFQLCTITLTADVMAYIHGMNPTIL FT EDWNFGITPPATSSLEDTYRFVQSQAIACQKNNAPAKEKEDPYSKFNFWTVDLKERFS FT SDLDQFPLGRKFLLQAGLRARPRLRPVKRAAPSSSKGTARKRAKTKR" XX SQ SEQUENCE 7759 bp; 2326 a; 1530 c; 1718 g; 2185 t; taactacaac catgatttat aaaataaggg agggaccgaa aacggttcaa ccgaaaccgg 60 tacatataaa agcggttgta gaaaacagtt atttgggggc aatgtctgct actgaacccc 120 acacggacca gccgcgtact ctagctgatt tgtgcaaggt atgcaatatt cctatgcata 180 gtttgcaact tccttgtgcc ttttgcaaga agacggtgtg tacagcagag atttatgcat 240 ttcaatataa ggacctattt gtggtgtgga gacacggctt tccacatgct gcatgtgcac 300 tgtgcctaga actgcacggg caaataaatt atagaaggca tcgcgaccgt gcgtgcctgt 360 gggaaacagt ggaacaagag tgtggaaagc cattggaaga aatatttata aggtgctggc 420 tgtgccataa acctttgtgc aacgtggaaa agcaacggca cgtagattac aacaggcgat 480 tccactgtgt tagaggctat tggaagggta ggtgtctaca ttgctggaag ccataatgca 540 tggaaatgtg gctacaattg aggatatagt ccttgattta aaaccagaac cgtttgacct 600 gtactgcagg gagcaattag aagactctga tgcagaagat gagacagcag taacacaacc 660 tgacaaacaa gcatttaagg tgttaagcca gtgtggaggt gtgtgttgta agacagtacg 720 gctatgtgtg tatagcacgc acacaggcat aagggtactg caggaactgc ttcatcagga 780 cgcactgcaa atagtgtgtc ccacctgtgc ttcacgacta taacggcatg gcggataacc 840 aaggtacaga ggaggagggg actgggtgta atggatggtt ttttgtggaa gcaattgtag 900 aacgtaaaac aggggatatt atttcagatg atgagcctga ggatgtggag gacagtgggc 960 ttgatatggt ggactttatt gataatagtg tgtcacaggt agaggggcag gaaaatccac 1020 aggcattgtt acatgcccaa cagctgcagg cagatgtaga ggcagtgcaa caattaaaac 1080 gaaagtatat aggcagtccg tatgtaagtc ctgttgcaaa cagcgaaccc tgtgtagaaa 1140 aggacctaag cccccggcta ggggctatat ccctaggacg gcggtcagcc aaagccaaac 1200 gacggctgtt tgataaggcc caaccgccgc caaatggcca tactgacgtg gaagctgcgg 1260 tggaggtaaa taccgagggg acagatgaaa cagagacaga ccaggtgcag acagtatctg 1320 gggaaacaac tacagatagc ctaggaaggc agcaaattac agaattaata cataacacaa 1380 atattcgtgt agcattgttt ggtatgttta aagacctata tggattaagt tttatggacc 1440 tagcacggcc atttaaaagt gacaaaacag tgtgtaccga ttgggttatt gcagcatttg 1500 gaatatatca tggtattaca gatggattta aaacattgct agagccacat tgtttgtatg 1560 gccatatcca atggctaaca tgtaggtggg gcatggtatt attattatta acaagattta 1620 aatgtggcaa aaacagatta acagtaagta aatgtttagg aatgttatta aatataccag 1680 aaacccaaat gttaatagat cctccaaaat tacggacgcc tgcagcagct ttgtattggt 1740 atagacaggg gctgtccaat gcaagtgaaa tatttggtac acccccggaa tggctggcca 1800 gacaaactgt aattgaatat agcttagcag acagccagtt tgatttatct aaaatggtac 1860 aatgggcata tgaccataat tatattgatg acagtattat tgccctggaa tatgctaaat 1920 tagctgatat agatgaaaat gcggctgcct ttctaggaag taattgtcaa gctaagtatg 1980 taaaagactg tggaacaatg tgtagacatt atataagggc acaaaaaatg caaatgacaa 2040 tgtcacaatg gattaaacat cgttgtgatt tagtagagga ggaaggtgag tggaaggaaa 2100 tagtacgatt ccttagatat caacatgtgg attttatatc ttttatgata gcattaaaac 2160 aatttttaca aggcatacca aaacacaatt gtatattact gtatggacct ccagacacag 2220 gaaaatctaa ttttgccatg agtttaatta gctttttagg aggtgtagtg ctatcatatg 2280 ttaattctag tagccatttt tggttagaac ctttggcaga tgccaaaata gctatgctag 2340 acgatgctac aacacaatgc tggaactata tggacattta tatgcgcaat gcattagatg 2400 gcaatcctat gtgctttgat agaaaacatc gagctatggt gcaaacaaaa tgtcctccac 2460 taatagtgac ctccaacata aatgctagta cagacgacag atggcgctac ctacacagta 2520 gagtaaaatg tttttgtttt cccaatagat ttccatttga tagtaatgga aaccctgtgt 2580 atgatttaag taataaaaat tggaaatcat tctttaaaag gtcatggtca cgtttagcgc 2640 tgaacgacaa cgataacgag gaggaggaga atggagaccc tagcaacacg tttagatgtg 2700 tgccaggaaa ggcttctaga cctatatgaa aaagatagta ataaactaga ggaccaaata 2760 gaacattgga aatgcatacg cctggagtgt gcattgcaat acaaagcccg ggaaatggga 2820 tacaaagtgt tacagcacca ggcactgcct gcacttgctg tgtcaaaggg caaagggcac 2880 aaggccattg aactgcaact tgcattagag acattgcaaa agacagtata cagcaccgaa 2940 ccgtggacat tacaggacac atgcctggaa cggtggaatg caccaccaac tggttgctta 3000 aaaagacgtg gacaaacagt agatgttata tttgatgggc atcaggataa cacaatgcaa 3060 tatgtaatgt ggggagatat ttattatcaa aactgtgatg gggagggatg gactaaggtg 3120 tgcagtaata tagatgcaat gggtatttat tatatggatg cagaacacaa agtgtattat 3180 gtggatttta aaaaggaagc atctaagtat ggggaatatg gacagtggga ggtgcgtatg 3240 ggcagcagca tcattttttc tcctgcatct gtatctagta ccgaagaggc attgtcaata 3300 tcctctactg gcactgctga acacaccaga ccagccaatt ccacaccacg taccgacaac 3360 tccacaaaag caatcccgtg cacgccgccg cctagaaaac gagctagagt ctacagcaca 3420 gaccagcaac cacacagcac ctcagacccc gtgggctgtg acaacgacag gcacatcagt 3480 gacgataaca acaagaacca aggacggcac acaagtagtg gtgacactac acctatagtg 3540 cactttaaag gtgaacctaa tacattaaaa tgttttaggc aaagaataca aaagtataaa 3600 catttgtttg aacaagcatc ctcaacatgg cattgggcat gtgtaccagg taccactaag 3660 aataggggca ttgtaacatt aacctatagt agtgtagaac aaaggcaaca atttttagta 3720 actgttcgca ttccacctag tatatctatg tcattagggg taatgtcatt ataacagata 3780 atcattgtaa agtttgtgat tgtacatact atattgtaaa acaaccagcc aatactgctg 3840 ctatgtgtat atagtgaggt atgtatggtg agtatggtag tgagtgcatg caggcctgca 3900 gtgactgagg tgaggtgtgt gtgtaggtgt gtgtagtgta tgcagtaata atgttgtata 3960 cagtaagttg gttaacatgt tggtttttat tatccatgtt attatggcaa tgtattacaa 4020 cagcatttac tttttttctt gtagccttta ttctattgtg ggtacctgcc ctgtgtgttt 4080 atgtgcgcct tgccaggctt cttgaacttg accttcactt tacataaggt gttactgtgc 4140 acacctactg tggatgccct gtgtaacctg cttaccatag tataataaat attgtgtaga 4200 tatatttgtg tattatggct aaagcaagag ccccacgccg gaaacgtgca tctgcaacac 4260 aattatatca aacatgcaag gcctctggca catgcccttc agatgtaatt cctaaggtag 4320 agggtacaac tatagcagat caaatcctac gatggggcag tatgggcgtg ttttttgggg 4380 gcttgggaat aggtactggt agtggcacag ggggccgcac agggtatata ccacttggac 4440 gaccctctac tacccttgaa ccaggtcctc ctgtacgtcc cgcaggggct gtagaaacag 4500 tagcaccctc tgacccttcc attgtgtctt tagtagagga atctagtgtt gtggatgttg 4560 gggcaccaac ccctaccatt ccatcacagg gtgggtttga aatagccaca tctagtgatg 4620 ctacccctgc tatattagat gtcacctcca ctaccacccc tattagggtg tctataacat 4680 cccatgataa tcctatatat acagagccat cattattaga ccccccccct ccagtacaaa 4740 tggatggtcg tgttttagta tctacctcta ctttgcaatc gtccactgct gaaaatatac 4800 ctatggacac ttttataatt atgcaggacc atataggcac aacaactagc acacctatac 4860 caaggccgcc tgcacgccca cgcttaggtt tatattcccg tgcgttacag caagtgcctg 4920 tacaggaccc tgccttttta caacagcctt ccagtcttat aacatatgac aatcctgtat 4980 atgagggtaa cccagatgtt accctacact ttgagcagcc cacaatacat aatgcacctg 5040 atcccgcctt tatggacata tttgctttac atagaccagc acttacaact cgtagggggg 5100 ttgtacgtta tagtagggtg ggcgacaggg ccacattaca cacacgtagt ggcctgcaac 5160 ttaaacctcg tgtgcatttt tttcaggact taagccctat tgctcatgtc cctgaggaaa 5220 tagaattaca ccctttaata tctgcaaaca atacaagcat taacaatggt ctttactcag 5280 atatatatga tgtatatgct gacacagatt ttgctgacac tggtggtttt tcctcttcta 5340 ctgtttcaca tagttctgta caaacagccc tacaaactac atctatacca tctcagtatg 5400 gtaacaccac agttccccta actgcctcat cgccatatac acctataccc acatccttta 5460 ggccctcatc aggtcacacc ccatttgttc ccgcacgtcc tatatttcca caaacaccca 5520 ttgctgttaa tggtggggat ttttacctgc atcctagtta tacttatgta cgcaaacgcc 5580 gtaaacgttt cccatatttt cttgcagatg gctatgtggc ggcctagcga aaacaaagta 5640 tacctgcctc ctaccccagt ttctaaggtt gtcagcacgg atgaatatgt gactcgcaca 5700 agcatatact atcatgcaag cagctctaga ttattggctg ttggacatcc atattttaaa 5760 gtacaaaaaa ccaataataa gcaaagtatt cctaaagtat caggatatca atatagggtg 5820 tttagggtgc aactacctga tcctaataag tttggactgc ctgatcctag tttatataat 5880 cctgagacac aacgcttagt atgggcatgc acaggtgtgg aggttggtag gggccagcca 5940 ttgggtcttg gcctaagtgg tcatccatta ttaaataaat tggatgatac tgaaaatgca 6000 cctaaatatg ttggtgcagg agctgacaat agggaaaatg ttagcatgga ctataaacaa 6060 acacagttat gtattttggg ctgcacacca cctataggtg aacactgggc taaaggcaac 6120 ctatgtacac ctaatacatt ggctgctggt gactgtcctc ctttggaatt agtaaattca 6180 tatatacagg atggtgatat ggtagatata ggatttgggg ctatggattt taaaacccta 6240 caaacctcaa aaagtgaggt accccttgat gtagctacct caatttgtaa atatcctgat 6300 taccttaaaa tggctgcaga ggcatatggg gacagtttat ttttttactt aaggcgggaa 6360 caaatgtttg ttaggcatat gttaaatagg gcaggtacca tgggtgagcc tgtacctaat 6420 gacttataca ttaagaaatc ctcaggtaac cttgacagtt ctatttatgc tgcaactcct 6480 agtggctcta tggtaacatc tgaataccaa atatttaata agccatactg gttacaacgg 6540 gcccagggtc aaaacaatgg tatttgttgg ggcaatcagg tgtttttaac agttgtagat 6600 accacccgta gtactaacct aacattgtgt gctacagcat ccacgcagga tagctttaat 6660 aattctgact ttagggagta tattagacat gtggaggaat atgatttaca gtttatattt 6720 cagttatgta ccataaccct tacagcagat gttatggcct atattcatgg aatgaatccc 6780 actattctag aggactggaa ctttggtata acccccccag ctacaagtag tttggaggac 6840 acatataggt ttgtacagtc acaggccatt gcatgtcaaa agaataatgc ccctgcaaag 6900 gaaaaggagg atccttacag taaatttaat ttttggactg ttgaccttaa ggaacgattt 6960 tcatctgacc ttgaccagtt tcccttgggt cgcaagtttt tactacaggc tggcctacgt 7020 gcacgtccgc gccttcggcc tgtaaagcgt gcagcccctt cctcctctaa gggtacagcg 7080 cgcaagcgtg ctaaaactaa aaggtaacag tgttgtatgt tgtgttgtta tgtgttgttg 7140 tgtttgtacc ttgtctgtgt gtatgttgtg tatgtattat gttatgtgtg gaatgtttgt 7200 gtgtcctatt tatgttgtga ctcgtatgtt atatatgttg tatgttttcc tgtattatat 7260 ataataaaga ctttggttgc accctatgag taacttttgt gtgatgttgt ttgctacgtg 7320 cttagtagcc tttacctttt cacctttggt gtccattttg tataatctcc attttatata 7380 accgaaaccg ttttcggttg ctgttggcac taaaactgtg ttttaagcac tttgtatcgt 7440 acatctaatc ttttgggcgc cgccacatcc tgccctggta gttttgccag cacatctgca 7500 cacccacaca tttataactg tcagaacaac ttcactttcc attgtgtaaa aacacgccct 7560 ttgcattcca acattgattt atatattttt tacataataa aacatgctag taggcacata 7620 ttttagctgt gtaaacttag taagtgcata gttggcaaac taaaacatag gtgtatgcca 7680 ggtacgtgtc tgtacaacag tgactaattc aggaaaccga tttcggttgc tcacccatta 7740 tcttttttat cattattat 7759