ID HPV42 STANDARD; ds-DNA; VRL; 7917 bp. XX DE Human papillomavirus ORF E6, ORF E7, ORF E1, ORF E2, ORF E4, ORF DE E5, ORF L2, and ORF L1 genes, complete cds. XX AC M73236 XX DT 21-JAN-1992 XX OS Human papillomavirus type 42 DNA. OC Human papillomavirus type 42 OC Viridae; ds-DNA nonenveloped viruses; Papovaviridae. XX RN [1] RP 1-7917 RA Philipp,W., Honore,N., Sapp,M., Cole,S.T. and Streeck,R.E.; RT "Human papillomavirus type 42: New sequence, conserved genome RT organization"; RL Virology 186, 331-334 (1992). XX FT KEY Location/Qualifiers FT CDS <3282..3644 FT /note="ORF E4 from bp 3282 to 3644" FT /gene="E4" FT /note="putative" FT /codon_start=1 FT CDS <3919..4206 FT /note="ORF E5 from bp 3919 to 4206" FT /gene="E5" FT /note="putative" FT /codon_start=1 FT TATA_signal 74..81 FT CDS 114..566 FT /note="ORF E6 from bp 108 to 566" FT /product="transforming protein" FT /gene="E6" FT /note="putative" FT /codon_start=1 FT CDS 542..823 FT /note="ORF E7 from bp 476 to 823" FT /product="transforming protein" FT /gene="E7" FT /note="putative" FT /codon_start=1 FT CDS 829..2760 FT /note="ORF E1 from bp 724 to 2760" FT /product="replication protein" FT /gene="E1" FT /note="putative" FT /codon_start=1 FT polyA_signal 1029..1035 FT polyA_signal 2280..2285 FT CDS 2702..3898 FT /note="ORF E2 from bp 2672 to 3898" FT /product="regulatory protein" FT /gene="E2" FT /note="putative" FT /codon_start=1 FT TATA_signal 3892..3895 FT polyA_signal 4378..4383 FT TATA_signal 4391..4394 FT CDS 4423..5856 FT /note="ORF L2 from bp 4348 to 5856" FT /product="minor capsid protein" FT /gene="L2" FT /note="putative" FT /codon_start=1 FT CDS 5837..7345 FT /note=" ORF L1 from bp 5756 to 7345" FT /product="major capsid protein" FT /gene="L1" FT /note="putative" FT /codon_start=1 FT polyA_signal 6758..6763 FT polyA_signal 7401..7406 FT polyA_signal 7745..7753 FT source 1..7917 FT /organism="Human papillomavirus type 42" FT /sequenced_mol="DNA" XX SQ SEQUENCE 7917 bp; 2433 a; 1478 c; 1647 g; 2359 t; cttattataa actacaatcc tggctttgaa aaataaggga gtaaccgaat tcggttcaac 60 cgaaaccggt acatatataa accacccaaa gtagtggtcc cagttaaggc agaatgtcag 120 gtacatctgc ctcatcacag ccacgcacat tataccaatt gtgtaaggaa tttgggctga 180 cattgcggaa tttacagatt tcctgcattt ggtgcaaaaa gcacttaaca ggcgcagagg 240 tgctcgcgta ccattttaaa gatttggtag tggtgtggag gaaggacttt ccatatgctg 300 catgtgcatt ttgtttagaa tttaattcta aaatttgtgc actgcgacac tacgaaagat 360 cagcattttg gtatacagtg gagaaagaaa ctggactact tttagaagaa caacaaatta 420 gatgtgcctt gtgtcaaaag ccgttatcac agagcgaaaa aaaccatcat attgatacag 480 gtacaagatt tcaatttata ttgtgtcagt ggacgggtcg gtgtacgcat tgcagaggac 540 aatgcgtgga gagacgccta ccctaaagga cattgttttg tttgacatac caacgtgtga 600 gacacccatt gacctgtatt gctatgaaca attggacagc tcagatgaag atgaccaagc 660 caaacaggac atacagcgtt acagaatact gtgtgtgtgt acacagtgtt acaagtctgt 720 taaactcgtt gtgcagtgta cagaggcgga cataagaaac ctgcaacaga tgcttttggg 780 cacactggat attgtgtgtc ctttgtgtgc ccgcgtggag taactgcaat ggcggatgat 840 acaggtacag aggaggggct agggtgttct ggatggtttt gtgtagaagc tatagtagac 900 aaaacaacag aaaatgctat ttcagatgac gaggacgaaa atgtagacga tagtgggtta 960 gatcttgtgg attttgtaga taatagtaca gtaatacata caaagcaggt acatgcacaa 1020 gccttattaa ataaacaaca agcacatgca gatcaggagg cagtacaggc actaaaacga 1080 aagctattag gcagtccata tgaaagccct gtcagtgatt cacagcacag catagacaac 1140 gaactaagtc ctaggcttgg cggtttaacg ctatgtcggg ggtcccaagg ggccaaacga 1200 cgattattcc agtcactgga aaatcgagac agtggatatg gctattctga agtggaagta 1260 cagcagacac aggtagaaca cggacatggc gccgtacatg ggactatggg taacgggggg 1320 gcagtgggta gtgaacttgg ggtgcaggaa aatgaagaag gtagtactac aagtacgcct 1380 acaacaaggg tggtagaatt acttaagtgt aagaacctgc atgcaacatt gttaggtaag 1440 tttaaagaat tgtttggagt gtcatttggc gatttagtaa gacagtttaa aagtgacaaa 1500 agcagttgta cagactgggt tattgcagca tttggggtta atcatagtat tgcagaaggg 1560 tttaatacat taattaaagc agattcacta tatacacata tacaatggct aacctgtacg 1620 tggggcatgg tgttattaat gctaattaga tttaaatgtg gaaaaaatcg tactacagtg 1680 tccaaaggcc ttagtaaatt attaaacata cctacaaatc aattattaat agagccacct 1740 cggttacaaa gtgtggctgc cgccatatac tggtttagat caggaatatc taatgctagc 1800 attgtaaccg gagacacacc agagtggatt caaagacaaa caattttaga acattgtttt 1860 gcagatgccc aatttaattt aacagaaatg gtgcaatggg catatgataa tgatattact 1920 gaagacagtg acattgcata tgaatatgca caacgggcag acagggatag caatgctgct 1980 gcatttttaa aaagtaactg ccaggcaaaa tatgtaaaag attgtggcgt catgtgcaga 2040 cattataaaa aagcacaaat gagacgtatg tctatgggtg catggataaa acatagaagt 2100 gccaagatag gggatagtgg agattggaaa cctatagtaa aatttattag atatcaacaa 2160 attgattttt tagcatttat gtctgcattt aaaaagtttt tacataatat acctaaaaaa 2220 agttgtttag tgttaattgg tcctccaaat acaggaaaat cacagtttgg aatgagttta 2280 ataaacttct tagcaggaac tgtaatatca tttgtaaatt cacatagcca tttttggctg 2340 cagccattgg acagtgcaaa aatagctatg ctggatgatg caactccacc atgttggaca 2400 tatttagata tatatttaag aaatttatta gatggcaatc catgcagtat agatagaaaa 2460 cataaagcat taacagttgt taagtgccca ccattactta taacatcaaa tacagatatt 2520 agaacaaatg acaaatggaa atacctatac agcagagtta gtttatttga atttccaaat 2580 ccatttccat tagatacaaa tggaaatcct gtatatgaat taaatgacaa aaattggaaa 2640 tcattttttc aaaggttgtg gtccagctta gaatttcaag aatcagagga cgaggaagac 2700 tatggagaga ctggccaaac gtttagatgc gtgccaggaa cagttgttag aactgtatga 2760 ggaaaatagt agggatttac aaaaacatat tgaacattgg aaatgtttac gtatggaggc 2820 agtggtattg tataaggccc gtgaaatggg ctttgcaaat ataggacatc aaatagtacc 2880 aacattggaa acatgtagag ccaaggccca catggcaatt gaaatacact tggcattaga 2940 gacattattg cagtcctcgt atggtaaaga accatggaca ttgcaagaaa caagtaatga 3000 actgtggctt acgaatccta aaaaatgttt taaaaaacaa ggacgtaccg tggaggttat 3060 atttgatgga aaacaggaca atgcaatgca ttatacagca tggacatata tatatataca 3120 aactgtgcaa ggtacatggt gtaaagtaca aggacacgtt tgccatgcag gactatatta 3180 tattgtggaa aatatgaaac agttttattg taattttaaa gaggaggcaa aaaaatatgg 3240 ggtaacagac caatgggagg tacatgatgg caatcaggtg attgtttctc ctgcacccat 3300 atctagcacc acatccaccg acgcagagat accctctact ggatctacta agttggtaca 3360 acaagtgtgc accacaaacc cattgcacac cacaacgtcc attgacaacc accacgcaga 3420 ctgtacagac ggaacagcat acaacgtgcc catccaaacc tcaccgccac gaaaacgata 3480 cagacagtgt ggacagtcgc catcacagca cctgcagcac tcaaacccca gcatccccag 3540 catccccagc gcatccgtgg accctggatt gtgtggggtc agaactaaca gtgaaaactg 3600 taacaagcga cggaaccact gtggaagtca ggctacgcct gtaattcatt tacaaggtga 3660 ccctaattgc ctaaaatgcc tacgatttag gctaaaaaga aattgttcac atttatttac 3720 acaggtgtca tctacatggc atttaacaga aaatgattgt acacgtgaca ctaaaactgg 3780 tataataaca atacattatt atgatgaagc acaaagaaat ttatttttaa atactgtaaa 3840 aataccttct gggataaaat cctgtattgg atatatgtct atgttacagt ttatatgatt 3900 agttgtatat gtgtataaac agttatagga cttcaatact gtgactccac aacgtgtggg 3960 acaaccggcc agaaactgct gcttttattg tttatagttg ttggtgcgtg tgttgtgtgt 4020 gtgtggatta gtttacaaaa ttatccatat cctgtatggg cctcttgcct tgctagctac 4080 ctaacattgg tgctattatc atggttgcag gtactaacat actttgacta tttttttcta 4140 tgtttaatca ttcttggtat tccttctgtc ttactaacat tactaataca tttagcaata 4200 caataacaca tattagttta ggtgtgtgtg tgtggtgtgc atgtgatttg tacatggttg 4260 tacatatata ataccaatta ttgtttggct actattttca tttatagcca cactgctgtt 4320 ttgcatattg gtattacaaa catataaact gttaccatac gtatatacag tgctgtaaat 4380 aaacttttgt tatattgtgt gtacttcttt tgtgctatta caatgccacc acaacggtcc 4440 cgcagacgaa agcgggcctc tgccacacaa ttatatcaaa cgtgtaaggc ctcagggaca 4500 tgtcctccag atgttattcc caaagttgaa ggaaccacat tggcagataa aattttacaa 4560 tggggtagtt taggcgtgtt ttttgggggg ttgggaattg gcactggtgc aggtacgggt 4620 gggcgcacgg gctatgtgcc tctgggaaca aggcctcctg taattgctga accaggacct 4680 gcagtacgcc caccaatagc tgttgacacc gtggggccat ctgatccttc tattgtttcc 4740 ttattagaag agtcatcagt tattgatgca ggaataacag tacctgatat tacttctcat 4800 ggaggtttta atattactac atctactggt gggcctgcct caacgcctgc tatattagat 4860 atctcccctc ccactaatac tatacgtgtc acaacaacta catctaccaa tcctttatat 4920 attgatcctt ttacattgca gccgccattg ccagcagagg ttaatgggcg cctattaata 4980 tctactccta ccatcacacc ccactcatat gaagaaatac caatggacac gtttgttgta 5040 tctacagata caactaacac atttactagt actcccattc ctggccctcg gtcgtctgca 5100 cgcctggggt tatattctag agcaacgcaa caacgtccag ttactaccag tgcattttta 5160 acatctcctg cacggttggt tacttatgac aatccagcct atgaaggact tacggaggat 5220 acattagtat ttgaacatcc atccattcat actgcacctg accctgattt catggatata 5280 gttgcattgc atcgtcctat gttatcatcc aaacagggta gtgtacgtgt tagtagaatt 5340 ggacaaaggc tgtctatgca gacacgtcgc gggacccgtt ttgggtcacg tgtacacttt 5400 tttcatgacc ttagccctat tacacactct tcagaaacta ttgaattaca gcctttatct 5460 gcttcttcag tatctgcagc ctccaatatt aatgatgggt tatttgatat ttatgttgat 5520 actagtgatg taaatgttac aaataccact tcctctatac ctatgcatgg ttttgctacc 5580 ccccgtttgt ccactacatc tttccctaca ttacctagca tgtctacaca ttctgccaat 5640 accaccatac ctttttcgtt tcctgccact gtgcatgtgg gccctgattt atctgttgtg 5700 gaccacccat gggacagtac cccaacgtct gtaatgcctc agggtaactt tgtaatggta 5760 tcaggatggg attttatatt gcatcctagt tatttttggc gtaggcgccg taaacctgta 5820 ccatattttt ttgcagatgt ccgtgtggcg gcctagtgac aacaaggttt atctacctcc 5880 tcctcctgtt tccaaggtgg tcagcactga tgaatatgtg caacgcacca actactttta 5940 ccatgccagc agttctaggc tattggttgt tggtcaccct tattactcta ttacaaaaag 6000 gccaaataag acatctatcc ccaaagtgtc tggtttacag tacagagtat ttagagttag 6060 gctccctgat cctaataagt ttacattgcc tgaaactaat ttatataacc cagagacaca 6120 gcgcatggtg tgggcctgtg tggggctaga agtaggtcgt ggacagcctt tgggcgttgg 6180 tattagtggc catccattat tgaataagtt ggatgatact gaaaatgcgc ctacatatgg 6240 tggaggccct ggtacagaca atagggaaaa tgtttctatg gattataaac aaacacagtt 6300 gtgtttagtt ggctgtaaac ctgccatagg ggagcactgg ggtaaaggta ctgcctgtac 6360 accacagtcc aatggtgact gcccaccatt agaattaaaa aatagtttta ttcaggatgg 6420 ggatatggtg gatgtagggt ttggggcact agattttggt gctttacaat cctccaaagc 6480 tgaggtacct ttggatattg taaattcaat tactaaatat cctgattact taaaaatgtc 6540 tgctgaggcc tatggtgaca gtatgttttt ctttttaagg cgagaacaaa tgtttgttcg 6600 tcatttgttt aatagggctg gcgcaattgg tgaacctgta cctgatgaac tgtataccaa 6660 ggctgctaat aatgcatctg gcagacataa tttaggtagt agtatttatt atcctacccc 6720 tagtggttct atggtaacat ctgatgcaca actatttaat aaaccatatt ggttacaaca 6780 agcacaagga cacaataatg gtatatgttg gggaaatcag ctatttttaa ctgtggttga 6840 tactacccgt agtactaaca tgactttgtg tgccactgca acatctggtg atacatatac 6900 agctgctaat tttaaggaat atttaagaca tgctgaagaa tatgatgtgc aatttatatt 6960 tcaattgtgt aaaataacat taactgttga agttatgtca tatatacaca atatgaatcc 7020 taacatatta gaggagtgga atgttggtgt tgcaccacca ccttcaggaa ctttagaaga 7080 tagttatagg tatgtacaat cagaagctat tcgctgtcag gctaaggtaa caacgccaga 7140 aaaaaaggat ccttattcag acttttggtt ttgggaggta aatttatctg aaaagttttc 7200 tactgattta gatcaatttc ctttaggtag aaagttttta ctgcaggccg ggttgcgtgc 7260 aaggcctaaa ctgtctgtag gtaaacgaaa ggcgtctaca gctaaatctg tttcttcagc 7320 taaacgtaag aaaacacaca aatagatgta tgtagtaatg ttatgataca tatttatgtt 7380 atttatttgt gtactgtgtt aataaactac tttttatatg ttgtgtgttc tccattttgt 7440 tttttgtact ccattttgtt tctagaccga tttcggttgt atctggcctg ttaccaggtg 7500 cattggccat gtttcctaac attttgcaaa cctattcact ttttaaattt ataaatgcaa 7560 tatgtgctgc caactgtttt atggcacgta tgttctgcca acgtacactc cctaattcct 7620 ttacataaca cacacgcctt tgcacaggca tgtgcacaaa ggttggcaaa ggttagcata 7680 tctctgcagt tacccatttc ctttttcctt ttttttatgt atgagtaact taattgttat 7740 atgtaataaa aaagctttta ggcacatatt ttcagtgttg gcatacacat ttacaagtta 7800 ccttggctta aacaagtaaa gttatttgtc actgttgaca cattactcat atatataatt 7860 tgtttttaac atgcaggtgg caaccgaaac cggtacataa atccttctta ttctttt 7917 //