ID HPV38 STANDARD; ds-DNA; VRL; 7400 bp. XX DE Human papillomavirus type 38 (HPV38), complete genome. XX AC U31787 XX DT 04-JUL-1995 XX OS Human papillomavirus type 38 DNA. OC Human papillomavirus type 38;Viridae; ds-DNA nonenveloped viruses; OC Papovaviridae;Papillomavirus. XX RN [1] RP 1 - 7400 RA Delius,H; RT "Direct Submission;" RL Unpublished. XX RN [2] RP RA Scheurlen,W., Gissmann,L., Gross,G., and zur Hausen,H; RT "Molecular cloning of two new HPV types (HPV 37 and HPV 38) from a RT keratoacanthoma and a malignant melanoma;" RL International Journal of Cancer 37(4), 505-510 (1986). XX XX Created by HIV database on 1-NOV-1995 from GenBank: U31787. XX XX XX FT KEY Location/Qualifiers FT CDS 200..625 FT /note="ORF E6 from bp 185 to 625" FT /product="transforming protein" FT /gene="E6" FT /note="putative" FT /codon_start=1 FT /translation="MELPKPQTVQQLSDKLTVPVEDLLLPCRFCNSFLTYIELREFDY FT KNLQLIWTQEDFVFACCSSCAYASAQYECQQFYELTVFGREIEQVEQQTIGLIVIRCQ FT YCLKCLDLIEKLDICCSHQAFHKVRGNWKGRCRHCKAIE" FT CDS 622..924 FT /note="ORF E7 from bp 580 to 924" FT /product="transforming protein" FT /gene="E7" FT /note="putative" FT /codon_start=1 FT /translation="MIGKQATLRDIVLEELVQPIDLHCHEELPDLPEDIEASVVEEEP FT AYTPYKIIVLCGGCEVRLKLYVWATDAGIRNLQDCLLGDVRLLCPTCREDIRNGGR" FT CDS 911..2725 FT /note="ORF E1 from bp 875 to 2725" FT /product="replication protein" FT /gene="E1" FT /note="putative" FT /codon_start=1 FT /translation="MADDKGTDPKEGCSDFIYLEAECSDISDLDNDLETLLEEGAGSD FT ISDLINDEVVEQGNSRELLCQQEREESELQVQYLKRKCFSPKAVQELSPRLQSMNISS FT EHKSKRRLFVEQDSGLELSLNEAEDSTQELEVPASAPAPAAEGDIGLGTVRDLLRSSN FT SRATLLSKFKDSFGVSFTELTRQYKSNKTCCHHWVLAVYAAKDDLIDASKQLLQQHCF FT YIWLQSFCPMSLYLCCFNVGKSRDTVVRLIATLLQVHENHILSEPPKNRSIPAALFWY FT KGSLNSNVFCFGEAPDWILSQTMIQHQTADTLQFDLSRMIQWAYDNDHIDESIIAYQY FT AKLADIDSNAKAFLAHNSQVKYVKECALMVRYYKRGEMKEMSISAWIHHCISKVEGEG FT NWQHIVRFIRYQNLNFIMFLDKFRTFLKNLPKKNCLLIYGPPDTGKSMFAMSLIKLLK FT GSVVSFANSKSQFWLQPLADGKIGLLDDATDVCWQYIDSFLRNGLDGNLVSLDIKHKA FT PCQMKFPPLIITSNINLLKEERYRFLHSRVTQIDFPNKFPFDSDNKPLFELTDQSWAS FT FFKRLWTQLELSDQEDEGDNGNSQRTFHCTAREVNGHI" FT CDS 2667..3992 FT /note="ORF E2 from bp 2637 to 3992" FT /product="regulatory protein" FT /gene="E2" FT /note="putative" FT /codon_start=1 FT /translation="METLSARFTVLQEKLMDIYESGVEDLDTQIQHWQLLRQEQIIYH FT YARRHGVTRLGYQPVPSLASSEAKAKDAISMVLLLESLKKSKYADEQWTLAQTSLEAV FT RSPPADCFKKGPKNIEVVFDGDPENLMSYTVWTYIYYLTDEDIWEKVEGHVDYTGAYY FT YEGKLKVYYLKFENDAKRYGVTGLWEVHVNKDTVFTPVTSSTPPVGDSTDSASRAALP FT EPSTSVSPERPPSQTARRYGRKASSPSTTSRRQRKGQRETTGTQRRRKSRSRSRSTNR FT GGRDTRRSSSRGSSVSPTRGRRRGGGDSRRRGPVTRSRSRSLSRASSAGGGISPDKVG FT TAVRSVGRQSGGRLTRLLADAADPPVILLRGDANTLKCYRYRFRKKHAGGFRFVSTTW FT SWIGDASNDRIGRSRMLLAFYSESQREKFIQTMKLPTGVEWSLGQFDDL" FT CDS <3178..3747 FT /note="ORF E4 from bp 3178 to 3747" FT /gene="E4" FT /note="putative" FT /codon_start=1 FT /translation="NLKMMLNDMVSQDYGKYMLIKTLCLPPLPVLRRQLETPPTPHPG FT RHSPSLPPPCPPNGHHPKQHGDTGEKHLALQPPPAGKGKDKEKPQAPKGEEKADQGPE FT APTGEGGTPGDPPPEDPQSPPPGEGEGEEGTAEGGGRSPARDQDPSHEPLLQGVAYRL FT TKWERQFDQLVDKVVEDLRGYWQTLQTPQ" FT CDS 4067..5650 FT /note="ORF L2 from bp 4043 to 5650" FT /product="minor capsid protein" FT /gene="L2" FT /note="putative" FT /codon_start=1 FT /translation="MVRARRTKRASVTDIYRGCKASNTCPPDVINKVEQSTIADKILK FT YGSAAVFFGGLGISTGRGTGGATGYVPLGQGPGVRVGGAPTVVRPGVIPEVIGPTELI FT PIDSVTPIDPTAPSIVSLTDSSAVDLLPGEVETIAEVHPGPIDPIEIDTPVVSGGRNT FT NAILEVADPHPPTRATVSRTQYNNPAFQIISEVIPTSGESSLADHVLVSEGSGGQQIG FT GTRTAEEIELQPLLSRYSFEIEEPTPPRRTSTPLQRARQQFSSLRRALYNRRLTEQVG FT VTDPLFFTSPSKLVRFQFDNPVFDEQVTQIFEQDIADFEEPPDRQFLDVVKLGRPTLT FT ESAEGYVRVSRLGRRGTIRTRSGTQIGSQVHFYRDLSTINTEEPLEMQLLGEHSGDAS FT IVQGPVESTLVDVNVTEVPEGVLTETSMDPDTFNSEDLLLDDAIEDFSGSQLVVGTPR FT RSTTSITVPRFQTPQNPTIYYQDIQGYHVSYPESRERPAIIYPTPDIPTVVIHVADSS FT GDFYLHPSLRWRRRKRKYL" FT CDS 5661..7193 FT /note="ORF L1 from bp 5568 to 7193" FT /product="major capsid protein" FT /gene="L1" FT /note="putative" FT /codon_start=1 FT /translation="MTLWLPASGKIYLPPTPPVARVQSTDEYVERTDIYYHATSDRLL FT TVGHPYFDVRSQDGQKIEVPKVSGNQYRSFRVTFPDPNKFALADMSVYDPDKYRLVWA FT CKGLEIGRGQPLGVGTTGHPLFNKVRDTENSSNYQNTSTDDRQNTSFDPKQVQMFIIG FT CTPCLGEYWDKAPVCDNAGDQTGLCPPLELKNSVIEDGDMFDIGFGNINNKTLSFNRS FT DVSLDIVNETCKYPDFLTMSNDVYGDSCFFFVRREQCYARHYFVRGGAVGDAIPDGTV FT NQNHNYYLPAKNGQGQRTLGNSTYFPTVSGSLVTSDAQLFNRPFWLQRAQGHNNGILW FT GNQMFVTVADNTRNTNFTISVSTENGGAQEYDSANIREYLRHVEEYQLSFILQLCKVP FT LNAEVLTQINAMNSGILENWQLGFVPTPDNSVHDTYRYITSKATKCPDAVPETEKEDP FT FGQYTFWNVDMTEKLSLDLDQYPLGRKFLFQAGLQTARTRAVKRPLVRKSSKSVKRKR FT TQ" FT source 1..7400 FT /organism="Human papillomavirus type 38" XX SQ SEQUENCE 7400 bp; 2305 a; 1383 c; 1625 g; 2087 t; catctttggc agacgaagtg caccgataac ggtaagactt ttctctttta accgtaggcg 60 ttggtttatt attcctggca acaatggtgg ttaacaacca tcacacgtaa tcggtacaag 120 caaccgcttg tggtagtaaa atgaattaaa aaaaaaaaca aggatatatt taaggggcct 180 gtaagcttgg gatgtattca tggaactacc aaaacctcaa actgtgcagc agctcagtga 240 taagttaaca gttcctgtag aggatctgtt attaccctgt agattctgca acagtttcct 300 cacgtacatt gaattacgtg agtttgatta caagaactta cagttaatct ggactcaaga 360 ggattttgtt tttgcatgtt gtagcagttg tgcttatgct tctgctcaat atgaatgtca 420 gcagttttat gaattaactg tctttggccg tgaaattgaa caggtggagc aacagacaat 480 aggccttatt gttataaggt gtcagtattg tttaaagtgt cttgatttga tagaaaaatt 540 agatatctgt tgctctcatc aagcatttca caaggttaga ggcaattgga aaggaaggtg 600 caggcattgc aaagcaatag aatgattggg aaacaagcta ctcttcgtga tatagttctt 660 gaagagcttg tccagcccat tgacctgcat tgccacgagg agttgcctga tcttccagag 720 gatattgaag catcagtggt agaggaggag ccagcataca ccccatacaa aatcatagtt 780 ctttgtgggg gttgtgaagt aaggctaaaa ctatacgtgt gggccaccga cgctgggatt 840 cggaatctgc aagattgttt gctgggcgac gtaaggcttc tgtgtcccac ctgtcgagaa 900 gacattcgca atggcggacg ataaaggtac tgatcctaaa gaaggctgta gtgattttat 960 atatttagaa gctgaatgct ctgacattag tgacttagat aatgatttgg aaacattatt 1020 ggaagaaggt gcgggatccg atatttctga cttaataaat gatgaggttg ttgagcaggg 1080 aaattcccgc gaattattat gtcaacaaga gagagaggag agcgaactgc aggttcaata 1140 tctaaaacga aagtgtttca gtccgaaagc tgttcaggag cttagtcctc gtctgcagtc 1200 tatgaatata tcttcagagc ataaatctaa aaggagatta tttgtggagc aagacagtgg 1260 actggagcta tctctaaatg aagctgaaga ttctactcaa gagttggagg taccggcgag 1320 cgctccagcg ccggcagcag agggtgatat agggctgggt actgtaagag atcttttaag 1380 gagcagtaac agcagagcaa cactgttaag caaatttaaa gactcgtttg gggtcagctt 1440 tacagaactg acaagacaat ataaaagcaa taaaacgtgt tgccaccatt gggtcttggc 1500 agtgtatgct gctaaggatg acttgataga tgcgtccaaa caattgttac agcagcattg 1560 tttttatata tggcttcaat cattttgtcc catgtcactt tatttatgtt gctttaatgt 1620 tggtaaaagt agagacactg ttgtaagact aatagctaca ttattacagg tgcatgaaaa 1680 tcatatattg tcagagccac caaaaaatag aagtattcca gcagcgttat tttggtataa 1740 aggaagtttg aatagtaatg tgttttgttt tggtgaagct cctgattgga ttctatcaca 1800 aacaatgata cagcatcaaa ctgctgacac tttgcagttt gacttgtctc gaatgattca 1860 atgggcctat gataatgatc atatagacga aagcattata gcttatcaat atgctaaatt 1920 agcagatatt gatagtaatg ctaaagcttt tttagctcat aacagccaag ttaaatatgt 1980 taaagagtgt gctttaatgg taagatatta taaaagagga gagatgaaag aaatgtctat 2040 ttctgcttgg attcatcact gcatatctaa agttgaagga gaaggcaatt ggcagcatat 2100 tgttaggttt attagatacc aaaatttgaa ttttattatg tttctagata agtttcggac 2160 ctttttaaaa aatctgccaa aaaaaaattg tttattaata tatggtcctc ctgacacagg 2220 aaagtctatg tttgcaatgt cacttattaa actattgaaa ggtagtgtag tatcttttgc 2280 taattcgaaa agtcaatttt ggttacagcc actagctgat gggaaaattg gtttattgga 2340 tgatgcaact gatgtgtgtt ggcagtatat agattctttt cttagaaatg gtttagatgg 2400 taatttagtg tcgttagata taaaacataa agcaccttgt caaatgaaat ttcctccatt 2460 aattattact tccaatatta atttattaaa agaggaacga tacagatttt tacacagtag 2520 agtaacacaa attgattttc caaataagtt tccctttgac tcagataata agcctttgtt 2580 tgaacttact gatcaaagct gggcatcttt ctttaaaagg ctgtggacac aattagagct 2640 cagtgatcaa gaagacgagg gagacaatgg aaactctcag cgcacgtttc actgtactgc 2700 aagagaagtt aatggacata tatgaatcag gtgtagagga cctggataca caaattcagc 2760 attggcagct tttaagacaa gagcaaatta tttatcacta tgcaaggaga catggtgtta 2820 ctcgattggg ctatcaacct gtaccttctt tggcaagttc agaagccaaa gcaaaagatg 2880 ccatttctat ggtcctttta cttgaaagcc tgaaaaaatc caaatatgca gatgaacaat 2940 ggacattagc tcaaactagc ctggaggctg ttcgcagccc tcctgcagac tgttttaaaa 3000 aaggacctaa aaatattgaa gttgtatttg atggtgaccc tgaaaatctt atgtcatata 3060 ctgtgtggac atatatatat tacctgacag atgaggacat atgggaaaaa gtggaaggcc 3120 atgtggatta tacaggagcc tattattatg agggcaaatt aaaggtgtat tatttaaaat 3180 ttgaaaatga tgctaaacga tatggtgtca caggattatg ggaagtacat gttaataaag 3240 acactgtgtt tacccccgtt accagttcta cgccgccagt tggagactcc accgactccg 3300 catccagggc ggcactcccc gagccttcca cctccgtgtc ccccgaacgg ccaccatccc 3360 aaacagcacg gcgatacggg agaaaagcat ctagcccttc aaccacctcc cgcaggcaaa 3420 ggaaaggaca aagagaaacc acaggcaccc aaaggagaag aaaaagcaga tcaaggtccc 3480 gaagcaccaa caggggaggg agggacaccc ggcgatcctc ctccagagga tcctcagtct 3540 cccccaccag gggaaggaga aggggaggag gggacagcag aaggcggggg ccggtcaccc 3600 gctcgagatc aagatccctc tcacgagcct cttctgcagg gggtggcata tcgcctgaca 3660 aagtgggaac ggcagttcga tcagttggta gacaaagtgg tggaagactt acgcggctac 3720 tggcagacgc tgcagacccc ccagtaatat tgttacgtgg agatgccaat accttaaaat 3780 gctatcgcta tcgatttaga aaaaaacatg ctggtggctt tcgctttgtt agcacaacat 3840 ggtcatggat aggagatgca tcaaatgatc gcatagggcg ctcacgaatg cttctagctt 3900 tttattcaga atcacaaaga gaaaagttta tacagactat gaaattacct acaggtgtag 3960 agtggtcatt aggacaattt gatgatttat agaataatct ataagagata ttttttatat 4020 attatgtaac cttttttact aacaatactg ctttgctact aacactatgg ttcgagcacg 4080 tagaaccaaa cgtgcatctg ttactgatat atacaggggc tgcaaggctt ctaatacttg 4140 ccctcctgat gtaatcaata aagtggaaca atcaacaata gcagataaga ttttaaaata 4200 tggtagtgct gctgtctttt ttggtgggct gggtattagc actggtcgtg gtacaggcgg 4260 tgctacaggc tatgtgcctt tggggcaagg acctggagtg cgagtgggtg gcgcccccac 4320 agtggtccgc cccggggtga tacctgaagt aattggacca accgaactga tacctattga 4380 ctcagtcaca ccaattgacc ctacagcacc ttcaattgtg tcattaactg acagtagtgc 4440 tgttgacctt ttacctggag aggttgaaac tattgcagaa gttcatcctg gccctataga 4500 ccctatagaa attgataccc ctgttgtgag tggaggccgc aataccaatg ctatattgga 4560 agtggctgac cctcatccac ccactagagc tactgttagc agaactcaat ataataatcc 4620 tgctttccaa ataatttctg aagtaatccc tacctctgga gagtcttctc ttgcagatca 4680 cgtgttagtg tctgaagggt ctggtggcca gcagatagga ggtaccagaa cagcagaaga 4740 aattgagttg cagcctttgt tatctagata tagttttgaa attgaggagc caacaccacc 4800 gcgaagaact agcaccccct tacaaagagc aagacaacag ttttcatcat tacgcagagc 4860 attatataat agaaggctaa ctgagcaagt gggtgtcact gaccctttat ttttcacatc 4920 accttccaaa ttggtgcgtt tccaatttga caatcctgta tttgatgaac aagtaacaca 4980 gatatttgag caggacatag cagactttga ggaaccaccc gatagacagt ttttggatgt 5040 ggttaaatta ggtaggccaa cattaactga gtctgcagag ggatatgtta gagtgagtcg 5100 tttgggaaga cggggaacga tccgaacacg cagtggtaca caaataggat cacaagtaca 5160 tttctatagg gatttaagta caattaatac agaagaaccc ttagaaatgc agttattggg 5220 tgagcattca ggtgatgctt caattgtaca aggtcctgta gaaagcactt tagtggatgt 5280 aaatgtgact gaggttcctg aaggtgttct tacagaaact tctatggatc cagatacttt 5340 taattcagag gatttattac tggatgatgc tatagaagac ttcagcggat ctcagttagt 5400 tgtaggaact ccacgcagat ccactacgtc aatcactgta cctagatttc agactcctca 5460 aaatcctacc atatattatc aggatataca ggggtatcat gtttcatatc ccgaaagcag 5520 agaaagaccc gccattattt atcctacacc cgatattcct acagtagtta tacatgttgc 5580 tgattcctct ggagattttt atttacatcc cagtttacga tggcgacggc gcaaacgcaa 5640 atatttataa tgtttttcag atgacacttt ggcttcctgc atctggtaaa atatacttgc 5700 caccaacacc tccagttgcg cgcgttcaaa gcacggatga atatgtggaa cgaacagaca 5760 tctattacca tgcaactagc gatcgcctat taacagtagg ccatccatat tttgatgtca 5820 gatcacagga tggtcaaaaa attgaagttc ctaaggtgtc aggaaatcaa tataggtcat 5880 ttcgggtaac ctttccagat cccaataagt ttgctttggc agacatgtct gtttatgatc 5940 cagataaata taggctggtg tgggcctgca aaggccttga aataggccga ggacagccat 6000 taggagttgg aactacagga catcctctat ttaataaagt aagagatact gaaaactcca 6060 gtaattatca aaacacatct actgatgaca gacaaaatac ctcttttgat cctaaacagg 6120 tgcaaatgtt tataataggc tgcactcctt gtctaggaga atactgggat aaagcacctg 6180 tatgtgataa tgcaggggac cagacaggcc tatgtcctcc actagaattg aaaaatagtg 6240 taattgaaga cggagacatg tttgatatag gatttggcaa tataaacaac aaaactctat 6300 cctttaatag atctgatgta agtttggata ttgttaatga aacctgcaaa tacccagatt 6360 ttcttaccat gtctaatgat gtttatggtg attcctgctt cttttttgtg cgacgggagc 6420 aatgctatgc cagacattat tttgttcgag gtggtgcagt gggtgacgct attccagatg 6480 gtactgtcaa ccaaaatcat aattattatt tacctgcaaa aaatggacag ggtcaacgca 6540 ctttagggaa ctctacgtat tttccaacag ttagtggatc cttggtgacg tctgatgctc 6600 agttatttaa tagaccattt tggttacaaa gagcacaagg ccacaataat ggtattttat 6660 ggggcaatca aatgtttgtt acagtcgctg ataatacccg aaatacaaac tttacaatca 6720 gtgtatccac tgaaaacggg ggtgctcaag aatatgattc tgcaaatatt agagaatatt 6780 taagacatgt tgaggaatac caattgtcat ttatattgca attgtgtaag gttcctttaa 6840 atgctgaagt gctgacacag attaatgcta tgaattctgg aatattagaa aattggcaat 6900 taggctttgt acccacccca gacaattctg tacacgatac atatcgttac ataacatcta 6960 aagcaactaa atgtccagat gcagtgcctg aaacagaaaa agaagatccc tttggtcaat 7020 atacattttg gaatgtggac atgactgaaa aattgtctct agatttggat caatatcctt 7080 tggggcgcaa atttttattc caagcaggtt tacaaacagc acgaacacgt gctgtcaaac 7140 ggccgttagt aagaaaatct tccaaatctg taaaacgcaa aaggacccag taaccgtttt 7200 cggtcgccca ataaaattta ttaactaatg tggtatgtga agcatttttt gaccttcttt 7260 gtgactaaac cgaacaagtc aacaccagta accgcgcccg gttaatcaga ttataaattc 7320 ctgaagggca gatttcaatc agtgcagata tcatctagca cctgcagcaa ccgccaagac 7380 tttgccagga cttggcagaa 7400