ID HPV28 STANDARD; ds-DNA; VRL; 7959 bp. XX DE Human papillomavirus type 28 (HPV28), complete genome. XX AC U31783 XX DT 04-JUL-1995 XX OS Human papillomavirus type 28 DNA. OC Human papillomavirus type 28;Viridae; ds-DNA nonenveloped viruses; OC Papovaviridae;Papillomavirus. XX RN [1] RP 1 - 7959 RA Delius,H; RT "Direct Submission;" RL Unpublished. XX XX Created by HIV database on 1-NOV-1995 from GenBank: U31783. XX XX XX FT KEY Location/Qualifiers FT CDS 102..542 FT /note="ORF E6 from bp 30 to 542" FT /product="transforming protein" FT /gene="E6" FT /note="putative" FT /codon_start=1 FT /translation="MDDQRPKNIFLLCRDSGISFDDLRLHCIFCAKVLTTAELSAFAL FT RELNVVWRTGAPYGACARCLLLQGIVRRLKHWDYSLYVEGVEEETKQSIDTQQVRCYM FT CHKPLVKEEKDRHRNERRRLHCIAGYWRGSCQYCWLRCTVRIPQ" FT CDS 518..781 FT /note="ORF E7 from bp 428 to 781" FT /product="transforming protein" FT /gene="E7" FT /note="putative" FT /codon_start=1 FT /translation="MHGPHPTVKDIELSLAPEDVPVQCNVQLDEEDYTNVEEPAQQAY FT RVVTLCPKCSSPLRLVVECSHADIRALEQLLLGTLTVVCPRCV" FT CDS 788..2776 FT /note="ORF E1 from bp 782 to 2776" FT /product="replication protein" FT /gene="E1" FT /note="putative" FT /codon_start=1 FT /translation="MDDTSGTEGDECSELERAGGWFMVEAIVDRRTGDKPSSDEDEDE FT DADEGEDFVDFIDDRPVGDGQEVAQELLLQQAAADDDVAVQAVKRKFAPSPYFSPVCM FT QPSIENELSPRLDAIKLGRQSGTAKRRLFQLPDSGYGQTQVDTESGPLQVQDICETGT FT QDGRQDADEGSGRNVGGNGGQEEERAGGDGEESQTQGVQTDKAACGVLAILRASNQKA FT TLLGKFKEQFGLGFNELIRHFKSSKTVCLDWVVCVFGVYCTLAEGIKTLIQPQCDYAH FT IQVLSCQWGMTVLMLVRYKRAKNRETVAKGLSTLLNVPESHMLIEPPKLRSGPAALYW FT YKTAMSNCSDVYGETPEWIVRQTMVGHALEEAQFSLSEMVQYAYDHDITDESMLAFEY FT ALLADTDANAAAFLSSNCQAKYVKDACTMCRHYKRGEQARMNMSEWIWFRGDKVQGDG FT DWKPIVQFLRYHDVEFIPFLCAFKTFLQGIPKKSCLVFYGPADTGKSYFCMSLLRFLG FT GVVISYANSNSHFWLQPLADAKIGLLDDATSQCWCYIDTYLRNALDGNQVCIDRKHRA FT LLQLKCPPLLITTNINPLEDDRWKYLRSRVQLFTFKNKFPLTTQGEPLYTLNDQNWKC FT FFRRLWARLSLTDPDDEEENGNPSEPFRCVPGQNARTL" FT CDS 2718..3848 FT /note="ORF E2 from bp 2688 to 3848" FT /product="regulatory protein" FT /gene="E2" FT /note="putative" FT /codon_start=1 FT /translation="METLANRLDVCQDKMLELYEKDSNKLEDQIMHWQLMRVENALLY FT KARECGLTHIGHQVVPPLSVTKAKARSAIEVHVALLQLQESAYAQDSWTLRDTSREMW FT DTVPKKCWKKRGVTVEVRYDGDETKSMCYVHWRDIFTQNYSDDKWVKVAGHVSYEGLY FT YIHEGEQTFYVKFKDDAYVYGETGKWEVHVGGKVIHHHAFDPVSSTREIPAAGPLCTG FT DTTKASTETSVGATEGPQQKRQRLETLNWEQQQRQYPQTPSTQTTERASQPLDVTRTS FT DCDTTCPYTVGHPSDPDCAPVVHLKGDPNCLKCFRYRLHKGKRKLYCKTSSTWRWSCE FT SENQAAFVTIWYTSYSQRNEFLSTVKVPPGIQVILGHMSMFV" FT CDS <3301..3609 FT /note="ORF E4 from bp 3301 to 3609" FT /gene="E4" FT /note="putative" FT /codon_start=1 FT /translation="FTTMHLTPYLAHEKYPLLDLCAPVTPPRRRPKPRWARPKDRSKN FT DSDSRHSTGSSSSDSTPKPPPRKPLNEQVNHWTLQGPATVTLHVHTPSGTQVTLTVHL FT " FT CDS 4338..5759 FT /note="ORF L2 from bp 4221 to 5759" FT /product="minor capsid protein" FT /gene="L2" FT /note="putative" FT /codon_start=1 FT /translation="MVAHRARRRKRASATQLYRTCKAAGTCPPDVIPKVEGTTLADRI FT LQWGGLGIYLGGLGIGTGSGTGGRTGYVPLSTRPGTVVDVSVPARPPVVIEPVGPSDP FT SIVNLLEDSSIINSGSTVPTFSGTGGFEVTSSATTTPAVLDITPATDNVVISSSNFTN FT PAFTEPSLLEVPQNGEVSGHILVSTPTAGTHSYEEIPMETFASPGTGNEPISSTPVPG FT VSRIAGPRLYAKAVTQVKVTDPAFLSRPTSLVTFDNPAFEPGDETIIFERPYPPSQVP FT DPDFMDIIRLHRPALTSRRGTVRFSRLGTKLSMHTRSGKGIGARVHYYQDLSPIGPTE FT DIEMEPLLAPAENAAGDSIYDVFADVEDADIAFTGRSRSATSSRGYTTVSPLSSTLTT FT KYGNVTIPFVSPVDVHLHPGPDIITPASTQWPFVPLVPADTTHYVYIDGGDFYLWPVT FT LFVPRRRRRKRLSYFLADGTVAL" FT CDS 5740..7248 FT /note="ORF L1 from bp 5656 to 7248" FT /product="major capsid protein" FT /gene="L1" FT /note="putative" FT /codon_start=1 FT /translation="MALWRSSDNLVYLPPTPVSKVLSTDDYVTRTNIYYYAGTSRLLT FT VGHPYFPIPKSSTNKADVPKVSAFQYRVFRVRLPDPNKFGLPDARIYNPDAERLVWAC FT TGVEVGRGQPLGVGLSGHPLYNKLDDTENSNIAHGDIGQDSRDNISLDNKQTQLCIVG FT CTPPMGEHWGKGTPCRQNTQQGDCPPLELITAPIQDGDMVDTGFGAMDFAVLQANKSD FT VPLDICQSTCKYPDYLGMAAEPYGDSMFFYLRKEQLFARHFFNRAGVAGDTIPETLYI FT KGQGNGRDVIGSAVYSPTPSGSMISSEAQLFNKPYWLRRAQGHNNGICWANQLFVTVV FT DTTRSTNMTLCVSTDSSATYDASKFKEYLRHGEEYDLQFIFQLCKVTLTPDIMAYLHT FT MNNSLLEDWNFGLTLPPSTSLEDTYRFISSSAITCQKDASPTTKEDPYAKLNFWEVDL FT KDRFSLDLSQFPLGRKFLMQLGVGARSSVSVRKRPASTTRGSSAAKRKRAKK" FT source 1..7959 FT /organism="Human papillomavirus type 28" XX SQ SEQUENCE 7959 bp; 2161 a; 1677 c; 1994 g; 2127 t; taaataataa tgaacagaag caaaagtagg gagggaccga aaacggtacg accgaatggg 60 gtacatataa aaagaggctt acattgaatg gcagaagctc aatggatgac caacggccta 120 aaaacatatt cctattgtgc agagacagtg gaatatcatt tgatgacctc cgtttgcact 180 gcatattctg cgccaaagtg ctgaccacag cggagctatc agcatttgca ttaagagaac 240 taaatgtggt gtggagaacg ggagcgccct atggtgcctg tgcccggtgt ttactactgc 300 agggcattgt gcgacgcctg aagcactggg actattcatt gtatgtggaa ggcgtggaag 360 aggagacaaa acaatctata gatacacagc aagtgagatg ctacatgtgt cacaaaccac 420 tggttaaaga agaaaaggac agacacagga acgaacggcg acgactgcac tgcatagctg 480 gctactggag agggagctgt caatactgct ggttaagatg cacggtccgc atcccacagt 540 aaaagatata gaattgagtc ttgcaccaga ggacgtccca gtgcaatgca atgtgcaatt 600 agatgaagaa gattatacaa atgtggagga accagcacaa caagcgtata gggtggtaac 660 actgtgtcca aagtgtagtt caccactgcg actggtggta gagtgcagcc acgcagatat 720 aagggcattg gagcagctcc tgttgggcac actgacggtc gtgtgccctc gctgcgtgta 780 actggacatg gatgatactt caggtacaga gggggacgaa tgttcagagt tggaacgggc 840 tgggggatgg tttatggtag aggccatagt agacaggcgg acgggcgata agccatctag 900 tgatgaggat gaggacgagg atgcagacga aggggaagat tttgtagatt ttatagatga 960 caggcctgta ggggatggac aggaagtggc acaggaactg ttgctgcagc aagcagctgc 1020 agatgatgat gtagcagttc aggctgtaaa acgaaagttt gctcccagtc cgtatttcag 1080 tcctgtgtgt atgcaaccca gcatagaaaa tgaactcagt ccgaggctag atgccataaa 1140 gctggggaga cagtcgggga cagccaaacg ccggctattc cagctaccgg acagtgggta 1200 tggccaaaca caggtggata cggaatcggg accactgcag gtacaggaca tttgtgagac 1260 ggggacacaa gatggccgcc aggacgcgga tgaggggagc ggtaggaatg tggggggaaa 1320 tggcggccag gaggaggagc gtgcaggagg ggatggggag gaatcgcaga ctcagggtgt 1380 acaaacagac aaggcagcct gtggagtgtt ggcaatatta agagctagca atcaaaaagc 1440 tacgctactc ggtaagttca aagaacaatt tgggttggga tttaatgaac ttatccgaca 1500 cttcaaaagt agcaaaaccg tttgcctaga ttgggtggta tgcgtgtttg gggtatactg 1560 tacattggca gagggcatta aaacattgat acagcctcag tgtgactatg cacacataca 1620 ggtgctgtcc tgccaatggg ggatgacagt gctgatgctg gtacggtaca aacgtgccaa 1680 aaacagagaa actgtggcta aaggattaag cacattacta aatgtgccag agagccacat 1740 gttgatagaa ccacctaaac taagaagcgg cccagcagcg ctgtattggt ataagacagc 1800 catgtcaaac tgtagtgatg tgtatgggga aacaccagag tggatagtga gacaaacgat 1860 ggttggacat gcactagagg aagcacagtt tagtctgtcg gagatggtac agtatgcata 1920 cgaccatgac attacagatg agagcatgct ggcatttgaa tatgcactac tagcagatac 1980 agatgccaat gcagccgcgt tcctaagtag caattgtcag gcaaaatatg taaaggacgc 2040 ttgcacaatg tgcagacact acaaaagagg tgaacaggcg cgcatgaaca tgtcagaatg 2100 gatatggttc agaggtgata aagtacaggg cgatggggac tggaaaccca tagtacaatt 2160 tttaagatat cacgatgtgg aatttatacc attcctgtgt gcctttaaaa ccttcctgca 2220 aggaattcca aaaaaaagtt gtttagtgtt ctatggtcca gcagatacag gaaagtcata 2280 tttctgcatg agtctattaa gatttctagg tggggtggta atatcttatg ccaattcaaa 2340 cagccatttt tggttgcaac cgttagctga tgccaaaata gggttgctag acgatgccac 2400 cagccagtgc tggtgctaca tagatacgta tttaagaaat gcattagatg gaaaccaggt 2460 ttgcatagac aggaagcata gagcactgct acagctgaaa tgtcctcctc tattaataac 2520 aacaaatata aatccactag aggatgacag atggaagtat ctgcgcagca gagtacaact 2580 gtttacattc aaaaacaaat ttccattaac aacacaagga gaaccactgt atacacttaa 2640 tgatcaaaat tggaaatgct tttttcgaag gttgtgggca cgtttaagcc ttaccgatcc 2700 tgacgacgag gaggaaaatg gaaaccctag cgaaccgttt agatgtgtgc caggacaaaa 2760 tgctagaact ttatgaaaag gatagcaaca aacttgagga ccagataatg cattggcaat 2820 tgatgcgtgt agaaaatgct ttgctgtaca aagcaaggga atgtggattg acacatattg 2880 gccatcaggt ggtgccacct cttagtgtaa ctaaagctaa ggcacgcagt gccattgaag 2940 tgcatgtagc tttgctacaa ttacaagaaa gtgcatatgc acaagactca tggacactgc 3000 gagacacatc acgagaaatg tgggacacag tacccaagaa gtgctggaaa aaaagaggtg 3060 taaccgtgga agttagatat gatggagacg aaaccaaatc catgtgttat gtacactgga 3120 gagacatatt tactcagaac tatagtgatg ataaatgggt aaaggtggca ggacacgtgt 3180 catatgaggg actgtattac atacacgaag gagaacaaac attttatgtc aaattcaaag 3240 atgacgcgta cgtgtatggg gaaacaggaa aatgggaggt acatgtggga ggcaaagtaa 3300 ttcaccacca tgcatttgac cccgtatcta gcacacgaga aatacccgct gctggacctt 3360 tgtgcaccgg tgacaccacc aaggcgtcga ccgaaacctc ggtgggcgcg accgaaggac 3420 cgcagcaaaa acgacagcga ctcgagacac tcaactggga gcagcagcag cgacagtacc 3480 cccaaacccc ctccacgcaa accactgaac gagcaagtca accactggac gttacaagga 3540 ccagcgactg tgacactaca tgtccataca ccgtcgggca cccaagtgac cctgactgtg 3600 cacctgtagt acacctaaaa ggtgatccta attgcttgaa atgttttaga tataggttac 3660 acaaagggaa aagaaaactg tattgtaaaa cctcttccac atggcggtgg agctgtgaat 3720 cagaaaatca agcagctttt gtaactattt ggtatacaag ttattcacag cgtaatgaat 3780 tcttgtccac tgtaaaggta ccacctggta tacaggtaat attgggacat atgtcaatgt 3840 ttgtataatt atcgaaccgt gtggtgatac agtgtgcaga ctggatactt atttgtgcag 3900 gctacatttt tgggcttatt ttgtgctgct gctgtgttcg ttttggctgt gtgtgcttcc 3960 tgcgctacct tgctatctgg caattgtgct gtgtttgtac ctgggcctgg tagcattata 4020 tttgcgaatt gtatcacata ttgtacaaat caatacataa gccttgctat gtatcctttg 4080 gtgctaaggg acaacaatgg cgatcatact gtcctgtttc tggagccaga tgacgtgtat 4140 ctattgttgt tgtttatatt ttttgttata cttgcattgt ttatcttgta tagacatttg 4200 ggttttttgt aactgtgtag ttgtgtgtta gttggtcacc acaatgtatt tttaagtact 4260 gtgtatatcc cagtgtgcta ttgagccact gccttttcta cacttgtttt ttttttttac 4320 agttcaataa agcaaccatg gtggcacatc gtgcaaggcg tcgcaagcgt gcatccgcca 4380 cacagcttta taggacctgc aaggccgcag gcacatgccc ccctgatgtt attccaaaag 4440 tggagggcac tactctggca gatcgtattt tgcagtgggg cgggctgggt atttatttgg 4500 ggggtctggg gattggtacc ggatctggga cagggggtcg cacgggatat gttcctctta 4560 gcacacggcc tgggactgtt gttgatgtta gtgtccctgc taggcctcct gtggtaattg 4620 aacctgtagg accatctgac ccctccattg taaacttatt ggaggactcc agtattatca 4680 attcgggttc caccgttcca actttttctg gtactggtgg ctttgaggtg acttcttcag 4740 ccacaactac ccctgctgtg ttggacatca cccctgccac tgacaatgtg gtcattagta 4800 gttccaactt taccaaccct gcctttactg aaccctcgtt gttagaggtt ccccaaaatg 4860 gtgaagtgtc gggacacatt cttgttagta cccccacggc tggtacacat agttatgaag 4920 aaatacctat ggagacattt gcttcgccag gtactggcaa tgaacctatt agtagcaccc 4980 ctgtacctgg tgtaagtagg atcgctggac cccgtctata tgccaaagct gtcacacagg 5040 ttaaagtaac agatcctgct ttcttgtctc gtcccacctc attggttact tttgacaatc 5100 ctgcatttga gccgggggat gaaactatta tatttgaacg cccataccct ccctcacaag 5160 tgcctgaccc agattttatg gacatcatac gtttgcatag gcctgcctta acatctcgca 5220 ggggtactgt gcgtttcagt cgcctcggta caaaacttag catgcacact cgcagtggca 5280 agggtatagg agctagggta cattattatc aggacctaag ccctataggc cccacggaag 5340 acattgaaat ggagcctttg cttgctcctg ctgaaaacgc tgctggggat tctatttatg 5400 atgtgtttgc ggacgtggag gacgctgaca tagcttttac tggtagaagt cgcagcgcca 5460 cgtcatctcg gggatacact acggtgtccc cactgtcttc cacactaact accaagtatg 5520 gcaatgtcac cattcccttt gtgtctcctg tggatgtgca cttacaccct gggcctgata 5580 ttataacgcc tgcgtctacg cagtggccgt ttgtgccctt ggttcctgct gacacaaccc 5640 attatgtgta catagatggc ggggattttt atttatggcc tgttaccctg tttgtacccc 5700 gacgtcgtcg ccgtaaacgt ctctcatatt ttcttgcaga tggcactgtg gcgctctagt 5760 gacaacctgg tgtacctgcc tcccacccct gtttccaaag ttctcagcac ggacgactat 5820 gtgacacgca ccaatattta ttattatgca ggcacttctc ggttgctgac cgtgggtcat 5880 ccttattttc ccattcctaa atcatccact aacaaagcag atgtgcccaa agtgtccgcc 5940 tttcagtata gggtattccg ggtgcggttg cctgacccaa ataagtttgg cctgccagat 6000 gcacgcatat ataaccctga tgcagaaaga ctggtctggg cttgcactgg ggttgaggta 6060 ggccgcgggc agcctttggg tgtcggcctc agtggacatc ctctctataa caagctagat 6120 gacactgaaa actctaacat agcacatggg gacattggac aggattcccg agacaacata 6180 tctcttgata ataagcagac gcagctatgt attgttggtt gcacccctcc aatgggggag 6240 cattggggca aggggacccc atgtcgtcaa aatacacaac agggagattg ccctccgttg 6300 gagcttataa ctgcccctat tcaggatggt gatatggtgg acactggctt tggtgcaatg 6360 gactttgctg tattacaggc caataaatcg gacgtgccct tagatatttg ccagtccact 6420 tgcaaatatc ctgattattt aggcatggcc gcggagccgt atggcgacag catgtttttt 6480 tacttgcgaa aggaacaact tttcgctcgg cattttttta atagagctgg tgttgctggg 6540 gacaccattc ctgaaacatt gtatattaaa ggtcagggca acgggaggga tgtgattggt 6600 agtgctgtgt atagtcctac acctagtgga tctatgatct cctctgaggc ccagcttttc 6660 aataagccat attggctgcg gcgtgctcag ggacacaata atggtatctg ttgggccaac 6720 caattgtttg taactgtagt ggatactaca cgcagtacaa acatgacgtt gtgtgtttct 6780 actgactctt cagctacgta cgatgctagt aaatttaagg aatacttaag gcacggggag 6840 gagtacgatt tgcagtttat attccagttg tgtaaagtaa ccttgacccc tgatattatg 6900 gcatatttac ataccatgaa caatagttta ttggaggact ggaactttgg gttgacttta 6960 ccaccatcca ctagcttgga ggacacgtat aggttcatat cttcctctgc cattacctgt 7020 caaaaggatg cttcccccac taccaaggaa gacccttacg ctaaactaaa cttttgggaa 7080 gtggatctta aggatcgctt ttctcttgat ctatcgcaat tccctctggg aaggaaattt 7140 ttaatgcagt tgggtgtagg tgcccgctcc agtgtctccg ttcgcaaacg tccagcgtcc 7200 accacgagag gatcgtctgc tgcaaaacga aaacgcgcca aaaagtagca ctactgtgtt 7260 ttgtatgttt gcctgttgtt gtcctgtgtg tcagtgtatg ggcgtccctg atatgtgttt 7320 gtacaaagta tggtgtatgt atttgtgtat gcatgtaatg tggttataac tgtgttttgt 7380 atgtttgcct gttgttgtcc tgtgtgtcag tgtgtgggcg tcctgctatg tgcttgtaca 7440 aagtatggtg tatgtatttg tgtatgcatg taatgtggtt ataagttatc ataataaact 7500 gtgtcacata gttttatatt ttttaatttc tgtaattgct gatcctgtga gtaagaaagg 7560 tggttccagg tcaagcgacc gatatcggta tccaaaatgg ccgcctatgc aggtgtgttc 7620 caggtgtgct taataccaat tagtcataca gatccatatc ctgcaaacct gccctgtctc 7680 gcaagttttt ggctgtgata ctatctttct atagtttatt tcatttgctg tatcattctt 7740 tctggcacgt caaaatgtct ccattgcaaa ttaactgctc ctgggcacca acttattatg 7800 actactttca cataattact atcttggctg ggttttatag gttgccttgc caatagaatg 7860 tgcttccaaa tctccaccaa gacacaccta atccggtcgc tgcttgcttt ctagccataa 7920 attaagcagt tgctacacgt ttctttccaa ctataatta 7959