ID RhPV1 STANDARD; ds-DNA; VRL; 8026 bp. XX DE Rhesus papillomavirus type 1 (RhPV-1), complete genome. XX AC M60184 M37718 XX DT 26-JAN-1993 XX OS Rhesus papillomavirus type 1 DNA, isolated from a metastasized OS tumor from a Macaca mulatta. OC Rhesus papillomavirus type 1 OC Viridae; ds-DNA nonenveloped viruses; Papovaviridae; OC Papillomavirus. XX RN [1] RP 1-8026 RA Ostrow,R.S., LaBresh,K.V. and Faras,A.J.; RT "Characterzation of the complete RhPV 1 genomic sequence and an RT integration locus from a metastatic tumor"; RL Virology 181, 424-429 (1991). XX FT KEY Location/Qualifiers FT CDS 22..597 FT /note="E6 ORF from bp 1 to 597" FT /product="transforming protein" FT /gene="E6" FT /note="putative" FT /codon_start=1 FT protein_bind 37..48 FT /bound_moiety="E2 protein" FT /note="putative" FT protein_bind 52..63 FT /bound_moiety="E2 protein" FT /note="putative" FT TATA_signal 67..71 FT /note="putative" FT CDS 594..935 FT /note="E7 ORF from bp 582 to 935" FT /product="transforming protein" FT /gene="E7" FT /note="putative" FT /codon_start=1 FT protein_bind 653..664 FT /bound_moiety="E2 protein" FT /note="putative" FT CDS 941..2818 FT /note="E1 ORF from bp 902 to 2818" FT /product="replication protein" FT /gene="E1" FT /note="putative" FT /codon_start=1 FT polyA_signal 1493..1498 FT /note="putative" FT protein_bind 2570..2581 FT /bound_moiety="E2 protein" FT /note="putative" FT CDS 2757..3857 FT /note="E2 ORF from bp 2730 to 3857" FT /product="regulatory protein" FT /gene="E2" FT /note="putative" FT /codon_start=1 FT TATA_signal 2889..2893 FT /note="putative" FT TATA_signal 3018..3022 FT /note="putative" FT CDS <3355..3630 FT /note="E4 ORF from bp 3355 to 3630" FT /gene="E4" FT /note="putative" FT /codon_start=1 FT repeat_region 3857..3963 FT /rpt_unit=3857..3874, 3946..3963 FT /standard_name="Direct repeat" FT /note="putative" FT CDS <3940..4413 FT /note="E5 ORF from bp 3940 to 4413" FT /gene="E5" FT /note="putative" FT /codon_start=1 FT polyA_signal 4443..4448 FT /note="putative" FT polyA_signal 4457..4462 FT /note="putative" FT CDS 4468..5868 FT /note="L2 ORF from bp 4462 to 5868" FT /product="minor capsid protein" FT /gene="L2" FT /note="putative" FT /codon_start=1 FT TATA_signal 5122..5126 FT /note="putative" FT CDS 6289..7353 FT /note="L1 ORF from bp 5872 to 7353" FT /product="major capsid protein" FT /gene="L1" FT /note="putative" FT /codon_start=1 FT TATA_signal 6904..6908 FT /note="putative" FT protein_bind 7670..7681 FT /bound_moiety="E2 protein" FT /note="putative" FT protein_bind 7845..7859 FT /bound_moiety="hormone receptor" FT /standard_name="glucocorticoid responsive element" FT /note="putative" FT protein_bind 7986..7997 FT /bound_moiety="E2 protein" FT /note="putative" FT source 1..8026 FT /organism="Rhesus papillomavirus type 1" FT /sequenced_mol="DNA" XX SQ SEQUENCE 8026 bp; 2118 a; 1789 c; 2067 g; 2052 t; tacttaacta tactcctgag tatgaaaaag ggtgtaaccg aaaacggtgc aaccgaaagc 60 ggtgcatata aaaagctcct gaaactttgg ttttttgtgg caatggtaga ctgccctggc 120 gagccaaacg aattgcccag gaccattcac gaactatgcg agcagcgtga ggagaccctg 180 cacgagcttc aattggagtg cgtgtattgc ctgaaggaac taacacgcat tgaggtatat 240 gattttgcac ggtgggattt aagattggtg catagacaag gcaagccata cggggtatgt 300 cccatatgct tgaggtttta ctcaaaaatt cgaaaatata ggcgatacga gtattcaata 360 tatgggtgta ctttagagcg tagaactaga aaacagttag tggaggtatt aataaggtgt 420 tattgttgtc agaagcccct gtgtcccatt gaaaagcaaa gacacgtgga ccaaggacaa 480 aggttccaca gaatagcggg acagtggacc ggaaggtgct tgatgtgctg gagaccaaca 540 gtacctgaga cccagccaga cactgatcaa cagggcagta gtttcttgca agcatgattg 600 ggcctaaacc taccctcgag gacattgtcc tagatttgca accatttcca caaccgcaac 660 cggtcgacct tatgtgttat gagcaattat ctgacagctc agaggatgag gatgaagtag 720 accatcatca caataatcag cagcagcatc atcagcacgc cagacctgaa gtaccagagg 780 atggtgattg ttatagaatt gtgagcgatt gttacagctg tggcaagcca ctgaggctgg 840 ttgtggttag tagccacgaa gagttacgtg tgctagagga cctgctgatg ggcacgcttg 900 acattgtgtg tcccagctgt gccagcagag tgtaactgca atggaccctg aaggtacacc 960 aggggaaggg gtggggtgta cggggtggtt taatgtggag gctatagtag aacgtaaaac 1020 gggggatgtg gtgtcagagg acgaagacga cacagaggat acagggatag atttggtaga 1080 ctttatagat gacacatgtg gaagtgtgca gacaggggac gaggcacctg gggcgttgtt 1140 gcacgcacag gaaacacaag cgcatgcaga ggcagtgcag gttttaaaac gaaagtttgt 1200 aggcagtccg gcagttagtc cgttgggaaa ctacaatccc tgtgtagaca gggatttaag 1260 tcccagatta aatgaaataa gtttaaacca aggcagcgga caggcaaaac ggagactgtt 1320 tttgccggac agcggttatg gcaatactga agtggaaacg tcgctattgc aggtagcagg 1380 ggggggcggc caggatgtac aggcaggggg gaaggaaaac acacggccag atgacggggg 1440 gggggatgcc acgcagctgc tccgttgcag caacttaaaa gccactttgc tgagtaaatt 1500 taaatctgtg tatggagtta gcttttcaga gttggtgcga agctttaaaa gcgacaggac 1560 cacgtgcgct gactgggtgg tgggggcagc gggggtccat catagcgtgg cagaggggtt 1620 aaagcagctc attcagcctt tttgcagtta tgcacacatc cagtgcctta catgcgactg 1680 gggggtgtac ctgctactgc tggcacggtt taagtgtggc aaaaacagac taacagtttc 1740 taaatgcatg agcacgctgt taaatgtgca agaaacgcac atgctaattg aaccaccgaa 1800 gctgcgtagc gcagcagcag ctctatactg gtacaggaca ggtatatcaa atgtaagtga 1860 agtaataggg gaaacacctg agtggattac aagacagaca atgtttcaac atggcctgga 1920 ggacagtata tttgatttgt ctgaaatggt gcagtgggca tacgaccacg actttacaga 1980 tgacagtgtg atagcgtacg agtatgcaca gctggcaggg atagacagca acgctgctgc 2040 atttttaaaa agtaatgcac aggccaaata tgtgaaggat tgtgccacta tgtgtaggca 2100 ctacaaaaga gccgaaaggc aacagatgac tatgtcacag tggataaaac aaaggtgtga 2160 aaaaactgat gatggagggg actggaggcc aatagtgcag tttttaaggt accaaggggt 2220 ggagtttata gcatttttag cagctttaaa gctgtttttg aagggcattc caaaaaaaaa 2280 ctgcatagtg ttatttggac cgccaaatac aggtaaatcc tactttggca tgagcttaat 2340 acatttcttg caagggtcta tcatttcata tgtaaattcc aacagtcact tttggttgca 2400 gcctctggca gatgctaagg tggccatgtt ggatgatgca actcctcagt gctggtccta 2460 tatagataat tatttaagga acgcactgga cgggaacccc attagtgttg atagaaaaca 2520 taaaaatctt gtacagatga agtgcccccc attgcttatt acctcaaaca ccaatgcagg 2580 tcaggatgac aggtggatgt atttgcacag tagaatggtt gtgtttacat ttgaacagcc 2640 atttccattt gatcagaacg gtaatccagt ttatgagtta aatgataaaa actggaaatc 2700 ctttttctca aggacatggt ccagattaga tttacaagag gaagaggaga cggaaaatga 2760 tggaagcact tgcagagcgt ttaagtgcgt tgcaggacag aatcttagaa ctgtatgaag 2820 ctgatagcaa ggacttaaaa gaccaaatag agcactggaa atgtgtgcgc caagaatgtg 2880 cagtgttgta taaggcacgg gaagtagggt tttcccacct gaaccatcag gtggtgccat 2940 cattaactgt gtcacgggct aaagcccaca aagcaattga agtgcagctg gcattagaga 3000 gtttacaaaa ttcggagtat aacaatgagg agtggacgct gcaagatgcc agcttggaga 3060 tgtggcacac agaacctaag ggatgcttca aaaaaacagg tgttccagta acagttttgt 3120 ttgactgtga caaagacaat accatggagt atgtgctgtg gggacacata tatgtgtggg 3180 gggacaatgg atgggtgaag acattcggtg aggcggacaa ctggggtctg cactataccg 3240 ttgctgggga aaaggtgtac tatgtgcagt tttatgagga tgctaaaaaa tatggacatg 3300 gaaatggaaa tggagatggc tatgagtggg aggtgcatgt tggtgggacg gtaatgcatt 3360 attctgactc tgtgtctagc gctacccact gcgacaaact acccactgtt gaaattgtta 3420 gcggactgca acacatcaac ccatcacccc cccccgccaa ccccagcgcc aaggaaaacg 3480 tgtggtcatc gcctgcaaag cgagtgcgtc ggtcagactc aggtggagat ccagtgcggg 3540 ccttggacgg taaaagccgg tcagtccttt gtggatctgc acacaacaac gctacaggga 3600 gttccggtga cagtgactat acgcctatag tgcacctaaa aggtgaatct aactgtttga 3660 agtgtttgcg gttcagactg ggaaagcata agcacctgta tattaatata tcgtccacct 3720 ggaggtgggc aaaccatgca agtgagaaag caattgtaac tgtgacattt gcaaatgagc 3780 ttcaaagaca acagttttta aacactgtaa aaataccttc tactgtaact ctgtcacaag 3840 gagtaatgac tgtgtagtgt gcattggcac acagggtttt gtattttttt ttttacaagt 3900 actgtttgta attaattttg tatattgact gtatattgaa ttgtggtgtg cattggcaca 3960 cagtggtctc atttcaagcc tgtacataca ttgaacagta tccaggtact gtgtaaagcc 4020 aattgttgct gctacgcttg taaaccgcca ccattctgct gtttctggtt gtgtttttgc 4080 tgctgttttt gcttggcctt gtgttttgtg cacttgttga gtcgctgctt ctgtgttttt 4140 ccggtatgcc tcagtgttgc tgcttatgct gttgttctgg gtgtccatag tgaacccgtt 4200 tgcagctttt ggtctgtgtt tgttttgttt tttaaccccg ttgcttttga tacacctgca 4260 tgccctcagt gtggtttaca gcagaatgat gtaaatactg cacatagaca tgttattatc 4320 agttattttg ctattgttgc tgttaatatt tactttgttt tggcactact tgttggtgct 4380 gcgtttaaag ccaccagcag ggcgcgcacg taaatgtaaa cagctgagac ggcggcgcag 4440 ataataaacg tcacacaata aagcgtcatg aagcatgcac acttgtcgcg gcgcaagcga 4500 gcagccccgc gcccacctgg tgggcggcaa aagcgtgcat ctgccacgca gctgtaccaa 4560 acctgcaagg cggcaggcac atgccccccc gatgttatcc ctaaggtgga aggcacaacc 4620 gtagcagatc aaattttaaa gtatggcagc atgggtgtat actttggggg tttgggcatt 4680 ggctctggtg ctggcacggg cggaagaagc ggctacgtgc ccctaggttc acgtcccgca 4740 tccattcccg agccgttgcc acgaccacca gtaacaattg agcctgtggg cccttccgat 4800 ccctccattg tgtcattgct ggaagagtcc agactaatag aggcaggtgt tccagccccc 4860 acattcccca ctcatggggg gtttgaaatt agcacatctg aagttagcac acccgctgtc 4920 ctggatgtgt ctagcggtgg ctctgatgtg cacgttagtg tgacctcctt tacaaaccct 4980 acctttactg agccatctgt gctgcgaccc ccgccccccg tagaggcgtc tggacgcctg 5040 gtaatctctg catcctctgt cagcacgcat agctacgaag aaatacccat ggacacattt 5100 gtaataactg gagaccacaa ctataacaca accagcacac ccattcctgg ttcacgtgcc 5160 cctgcacgac ttggtctata tggacgtgct acccagcaag tgcgggtggt ggatcctgca 5220 tttataacca cccctgcgcg actggtgaca tatgacaacc ctgcatatga gggtgtggac 5280 gatgccaccc tgcaattttc ccactctgac attcaccagc cgccagatcc tgacttcctt 5340 gacattgtgg cattgcacag gcccgccttg acctcacgta agggcaccgt gcgctttagc 5400 cgattaggcc agcgggcaac actaaccacg cgcagtggta agcgtattgg ggccaaggtg 5460 catttctatc atgacctcag tcccattgcc cctgcagaaa gcatcgagtt gcagcccctg 5520 tcatctcagg gagagctgta tgacatatat gcagatgtag acgggcaaga ggacgctgca 5580 gctgtggcta acaccccatt aaacagcaac agcagtggca ttgcaagccc ctggaacacc 5640 acagtgccac tcagtgcagg ggcggacgtg acgctgcagt ccggccccga cgtgtccctg 5700 gatgcaccag tggctgaatc gcctgtgcac cctggagtgc ctctaaggcc ttctgcacat 5760 attattctgt acgggggaga cttttatttg caccctagct acctcggtat tcgcaggaaa 5820 cgtaaacgca tgcacaattt cttttcagat gtctatgtgg cggcctagtg actccaaggt 5880 ctacctacca cctgtcctgt gtctaaggtg gtcagcacgg atgaatatgt ctctcgcaca 5940 agcatatact atcacgctgg cagttccaga cttctggctg ttggacatcc ctactatgct 6000 gtaaagaagg gcaacaacaa agtgtcagtg cccaaggttt ctggtttaca ataccgagtg 6060 tttcgagtgc gtttgcctga ccccaataag tttggccttc cagatgctaa cttttatgac 6120 cctaacacac agcgccttgt gtgggcctgt ttaggcgtgg aggtggggcg tggacagcca 6180 ctgggagtgg gcaccagtgg tcatccactg ctgaacaaac tagatgacac ggaaaatggc 6240 cctaaagtgg ccgggggaca aggagcagat aacagggaat gcgtgtcaat ggactacaag 6300 caaacacagc tgtgcatgct aggatgcaag ccccctgtgg gtgagcattg gggaaaagga 6360 aatccttgca ccactggcgc tgcaggtgac tgccctgcac ttgagcttgt taactcagtt 6420 atacaggatg gggacatggt tgatacaggg tatggcgcta tggactttaa tgcactgcag 6480 gccaacaaat cagatgttcc tatagacata tgcactagcg tgtgcaaata ccctgactat 6540 ttaaaaatgg catcagatcc ctatggcgac agcttgtttt tttacctgcg aagggagcaa 6600 atgtttgtca gacacctgtt taacagagct ggcacaatgg gtgacagtgt ccctgatgac 6660 ttgtatatta aaggcagtgg aagcaatgtc aagcttgcca gccacgtgtt ttaccccaca 6720 cctagtggct caatggtgac atctgatgcc caattattta acaagccata ctggttacag 6780 aaagcccagg gccataacaa tggcatctgt tggggcaacc aagtgttcct tactgtagtt 6840 gacaccacta ggagcacaaa catgacactg tgtgcatcca ctgcctccac agttactaca 6900 ccatataata atgagagttt taaagagtac ctgcgacatg tggaggagtt tgatttgcaa 6960 tttatatttc agctgtgcaa ggtaaccctg aacactgaag taatggccta catacacagc 7020 atggatgcca gcatactgga ggactggaac tttggtttgc agcctcctcc gtctggctcc 7080 ttgcaggaca cctataggtt tgtgacgtct gccgccatca cctgtcaaaa acctgcaccc 7140 cccaaagaaa aggaagaccc gttggctaag tatacctttt gggaggtgga tttaaaggaa 7200 aagttttctg cagatttaga ccaatttccc ttaggccgca aatttttgct gcaagctggc 7260 atgcgtgcac gccctaccct gcgcgccccc aaacgcacag cctcatctac ctcatcttcc 7320 agcccccgca aacgcaaacg caccaaacgc taacgttgct tatatttatg ttgttgtacc 7380 cagtgtgcat gatttatgta tgtgtgcatg ttgtacgtga ttttgtattt cctgtgttgt 7440 gcgtgtcact gttttgtgtt gttgcgtgag tgtgttgcac ttatgtgttt attaaagtat 7500 gcgtggtcgc acccgagtga gtaactgtgt gtgtccggcg tgtagtttct gtcacatgca 7560 tgcatgcaca cccaaacact gttgccactg cctttaacag cttgcctgct gcacttccat 7620 tttgaaccct tctccatttt ccctgcaaac cctccatttt atggtctcga ccggtttcgg 7680 tcgcgcttgg cacgcatttt gggcaaacaa aaccacaaca ctgctaatcc tctggcttcc 7740 tgcctctcct actgctgcat acctgtggtt gtgctttggc gctccctggt gactcactgt 7800 ctctgcaaac aaaaatttgc acacacactt aatccaaccc tctttgtaca aaatgctttt 7860 ggcagtacat ttctaagagt tactcatgct aattgcatag ttggccacaa tttcagggtt 7920 ggattgccaa tactatgtcc ttttaaatgt gattaatttt caaaatgttc ttgcaggtgt 7980 gtgtgaccgg gatcggtcaa actttcacaa gcatttttta tagtaa 8026 //