ID EEPV STANDARD; ds-DNA; VRL; 8095 bp. XX DE European Elk papillomavirus (EEPV), complete genome. XX AC M15953 XX DT 15-JUN-1988 XX OS European Elk papillomavirus DNA isolated from a wild elk OS (Alces a. alces) in Sweden. OC European elk papillomavirus OC Viridae; ds-DNA nonenveloped viruses; Papovaviridae; OC Papillomavirus. XX RN [1] RP 1-4780; 7144-8095 RA Ahola,H., Bergman,P., Stroem,A.C., Moreno-Lopez,J. and Petterson,U.; RT "Organization and expression of the transforming region from the RT European elk papillomavirus"; RL Gene 50, 195-205 (1986). RN [2] RP 1-8095 RA Eriksson,A.; RT "The genome of the Elk papilloma virus"; RL Unpublished (1987) Swedish Univ. of Agricultural Science, Uppsala. XX XX Sequence in computer-readable form for [1],[2] kindly provided by XX U.Petterson, 25-Aug-1987. XX FT KEY Location/Qualifiers FT repeat_region join(8088..8095,1..11) FT /rpt_unit=8088..8095, 11..4 FT /standard_name="Inverted repeat" FT /note="putative" FT repeat_region join(7787..8095,1..5) FT /rpt_unit=7787..7794, 8093..5 FT /standard_name="Direct repeat" FT TATA_signal 59..65 FT /note="putative" FT CDS 118..525 FT /note="E6 ORF from 64 to 525" FT /product="transforming protein" FT /gene="E6" FT /note="putative" FT /codon_start=1 FT misc_feature 282..288 FT /standard_name="Splice donor site" FT /note="putative" FT misc_feature 340..346 FT /standard_name="Splice donor site" FT /note="putative" FT misc_feature 440..454 FT /standard_name="Splice acceptor site" FT /note="putative" FT misc_feature 469..483 FT /standard_name="Splice acceptor site" FT /note="putative" FT CDS 482..790 FT /note="E7 ORF from bp 389 to 790" FT /product="transforming protein" FT /gene="E7" FT /note="putative" FT /codon_start=1 FT misc_feature 541..555 FT /standard_name="Splice acceptor site" FT /note="putative" FT CDS complement(643..717) FT /note="ORF on complementary strand" FT /note="putative" FT /codon_start=1 FT CDS 783..2618 FT /note="E1 ORF from bp 753 to 2618" FT /product="replication protein" FT /gene="E1" FT /note="putative" FT /codon_start=1 FT misc_feature 796..802 FT /standard_name="Splice donor site" FT /note="putative" FT misc_feature 844..847 FT /standard_name="Splice donor site" FT /note="putative" FT misc_feature 864..870 FT /standard_name="Splice donor site" FT /note="putative" FT CDS complement(1032..1385) FT /note="ORFC" FT /note="putative" FT /codon_start=1 FT misc_feature 1214..1220 FT /standard_name="Splice donor site" FT /note="putative" FT TATA_signal 2363..2369 FT /note="putative" FT misc_feature 2547..2553 FT /standard_name="Splice donor site" FT /note="putative" FT CDS 2554..3801 FT /note="E2 ORF from bp 2527 to 3801" FT /product="regulatory protein" FT /gene="E2" FT /note="putative" FT /codon_start=1 FT CDS <3143..3487 FT /note="E4 ORF from bp 3143 to 3487" FT /gene="E4" FT /note="putative" FT /codon_start=1 FT misc_feature 3169..3183 FT /standard_name="Splice acceptor site" FT /note="putative" FT CDS 3231..3500 FT /note="E3 ORF from bp 3231 to 3500" FT /gene="E3" FT /note="putative" FT /codon_start=1 FT /partial FT misc_feature 3301..3315 FT /standard_name="Splice acceptor site" FT /note="putative" FT misc_feature 3349..3363 FT /standard_name="Splice acceptor site" FT /note="putative" FT CDS complement(3529..3849) FT /note="ORFB" FT /note="putative" FT /codon_start=1 FT CDS 3886..4017 FT /note="E5 ORF from bp 3865 to 4017" FT /gene="E5" FT /note="putative" FT /codon_start=1 FT CDS complement(4121..4348) FT /note="ORFA" FT /note="putative" FT /codon_start=1 FT polyA_signal 4561..4566 FT /note="putative" FT CDS 4590..6023 FT /note="L2 ORF from bp 4566 to 6023" FT /product="minor capsid protein" FT /gene="L2" FT /note="putative" FT /codon_start=1 FT CDS 6034..7539 FT /note="L1 ORF from bp 5995 to 7539" FT /product="major capsid protein" FT /gene="L1" FT /note="putative" FT /codon_start=1 FT polyA_signal 7574..7579 FT /note="putative" FT repeat_region 7591..7615 FT /rpt_unit=7591..7600, 7606..7615 FT /standard_name="Direct repeat" FT /note="putative" FT CDS 7688..7822 FT /note="ncORF1" FT /note="putative" FT /codon_start=1 FT repeat_region 7690..7982 FT /rpt_unit=7690..7696, 7982..7976 FT /standard_name="Inverted repeat" FT /note="putative" FT repeat_region 7740..7944 FT /rpt_unit=7740..7760, 7924..7944 FT /standard_name="Direct repeat" FT /note="putative" FT repeat_region 7770..7822 FT /rpt_unit=7770..7790, 7802..7822 FT /standard_name="Direct repeat" FT repeat_region 7843..7965 FT /rpt_unit=7843..7862, 7946..7965 FT /standard_name="Direct repeat" FT /note="putative" FT CDS 7863..8066 FT /note="ncORF2" FT /note="putative" FT /codon_start=1 FT repeat_region 7937..7955 FT /rpt_unit=7937..7944, 7955..7948 FT /standard_name="Inverted repeat" FT /note="putative" FT source 1..8095 FT /organism="European elk papillomavirus" XX SQ SEQUENCE 8095 bp; 2159 a; 1814 c; 2047 g; 2075 t; gttaacaatc accagatctt gcccgttttt gtgagcggga aagctggtta caggtttata 60 taaaaaggcc caccgcacaa gttttcacag acggttcagg atacttctaa tacatgcatg 120 tgtggcgaat gctatgcata cctcacctgc atctggtgca agaagggctt agataaggta 180 gatgcaaagc gatgccatga aaaaaaaata agaatagcgt gcaggaacgg aaaacattgt 240 gctgtctgta catcttgcct ggaaaatggg ctgtaccttg aaaggtccct ttttcctggg 300 cgacccatct accctggaga cctgtatgag cccgatccat gggtcatgtt caacgacatt 360 agatgcatgt attgtggtgg atgcctaacc cgcgacgaaa aagagagaca cagactgttt 420 tgtgaagact tctggatatt caggcatcag gtgcggggac gttgctatct ctgcaccagg 480 catggttcac ggcccccgta caaagaaaca cctgccgccg tatgaatcac ctcccctcac 540 actgctccta gagccagttg ctccggtgca acagacaggc attcaggcac cgcagaggaa 600 gccaccttcc cagaaaggac acaaaaaagg acacaagaaa gtttattctg tgactgtgcc 660 ttgcaatgga tgtgacaaaa acctggaatt ttgtgcaaga acttccagcg ccaccatctt 720 aacgctgcaa aacctcctgc tgaaagacct agacttcctg tgctctacct gcgagaccaa 780 ccatggctga aactgcaggt agctcggggc aggggggggg agcttatatc tgctttgaag 840 ccgactgtag cgactctgat acagaggttg attcacctgt acaatgctct gattcaagtg 900 atgaggatct agtagataat gccaatatcg ttccgggaaa ccacctggag ttgttccaaa 960 cgcaggaaaa agaggcggga gaaagacaga tttcgctttt gaaaagaaaa ttctgtttga 1020 gcccgggaac ctcagaggtc gaggagctta gtcctgggct tgccggaatc agaatctctc 1080 cgccaaagcg aaatccggtg gttaggagaa ggctttttga cgcaggtggg agagacgccg 1140 tgcgaacacc gcgtgatcat gaagttaata gttctcctga acccaggagt caggtacagt 1200 cgggaagtag cagtaggtct tgggagggac atctggaatc cattaacgag cctgctagtg 1260 acggcaacat ggccgccgtg atgcacaagt tgttcaagac tttgtacatc gcgggttttg 1320 gggagataac acgcgtcttt caaagtgata aaactaacaa taatcagtgg gtgatagcag 1380 cccatggcgc atcagaggtg ctttatgccg caagctttga aatactgagc aaacactgca 1440 gctacctgca ggcgtctagg aaggtgcatg agacaggaag catgtctttg ttcttagctg 1500 tcttcaatgt tgggaagagt agggagactg tcagaaaact aatttcaggt gtcttaaaca 1560 ccccgtgtag ccgcctacta ttgcaaccgc cgaaaattcg tggactatgt cctgctttat 1620 tttggtttaa gttggggctc tccccagcaa cacagacgca cggtacgact ccggactgga 1680 ttaagcagca gaccaatgtg gcctataata ctggggaggc ctctaaattt gattttggca 1740 caatggtaca gtgggcatat gaccaccggc taacagagga gtgcaaaatt gcatatcaat 1800 atgcaaaatg tgcaggtaca gacctaaatg cgaaagcatt tcttgcaagt accaatcagg 1860 cacggctggt caaggactgc tgtactatgg tgaaacatta cctgagagct gaagagcagt 1920 cattaaccat ttctgctttt attaaaagga gatgcgataa tgcaactgga aaaggcagtt 1980 ggttgagcat tatgaatctg ttaaagtttc aaggcatcga gcccattaac tttgtaaatg 2040 ccttgaaacc atggctgaaa ggcaccccaa aacataattg catagcaatt gtaggacccc 2100 caaatagtgg gaagtctctt ctgtgcaata ccctcatgtc gtttctggga ggaaaggtac 2160 tgacgtttgc caaccactcc agccacttct ggttagcgcc ccttaccgac tgtagggtcg 2220 ccttgataga tgatgccacg catgcgtgct ggagatactt tgacacatat ctcagaaatg 2280 tacttgacgg ttatccagtt tgtattgaca gaaagcacaa atccgctgtg cagctcaaag 2340 cccctcccct tttgctaacc agtaatattg atgtgcatgc agatgaaaag tatttctatc 2400 tgcaaagtag agtcaaaacc ttctatttca aggagccgtg ccctgcgtct gatactggtg 2460 agcccctttt ctttattact gatgctgact ggaaaaattt ttttgaaagg ctatgggagc 2520 gattagatct cagcgaccaa gaggacgagg ttgatgaaga tgagtgcagc cagcgatcat 2580 ttacttgcag cgcaagaaac acagatgcaa tgcattgaga aagatagtcg cctgttacag 2640 gatcatgcat gctattgggg ggcagtaaga agggaaaaac tgttattata tgcagcgaga 2700 acaaaggggt taaaaacaat tgggtgtgtg cctgtgcctc cttgttctgt tactgcagag 2760 caagcgaagc aagcaatatg catgcaattg attgtggagg aattactgca cagtccatgg 2820 gccaaagaac catggtccct tacagaccta agctgggaga gatatcaggc tgccccaaaa 2880 gggtgtttga aaaaaggcgc cagagtggtg gaagtggagt atgatgggaa ctcttctaat 2940 aagacttggt atacagcttg gagtacagtg tacgtgcgcg gaacggaaga ggagggctgg 3000 gagactgctg tctgtgctgc agacggacag ggcatttatt attgcgccgg gatgagcagt 3060 aaggtgtact ttgaaacctt tgaaactgat gcccgcagat ggagcaggac ggggcactgg 3120 actgtgaggg ataacgatgt gatatatcat tcaacctttg gtgcaccccc tcactctaga 3180 aacgacagag actgcatcga aggattctgg agcgacgccg gggagcgtag aggctcgaga 3240 gggtccgaca caaccgacag agccctgcct taccctgctg ctcgacaatc ccccatttgt 3300 cgccccgtca gaactggcga aaaccggagt cgggccgttc accgccaggc tccctacagc 3360 gcaccatcat ccccggggag ttccgtgggc cccgattccc cctccgagag ctcgcgccag 3420 gtaccgctgg ttttgctacc aggaccatca gatccagcgc cgccgtcgcc ggactctaca 3480 gacgtaatcg cagagggtga caaggaacct gagcggttca gcattctctc aaaaccaggt 3540 gggcagccat gtctgatact tagtggaaac ggaaaccaag ctaagtgcta tcgtttccgc 3600 tgcaagagat atttcagaga acactatcag cacataacga ccacctggtg gactgtagga 3660 gagcgaggat ctgaaaggca cggagatgcc tgtgtgctgg tgacattcaa agacagttcc 3720 cagagagggg tgtttttgaa gcgagtgcct ttgccacctg gaatgcgcgc gcaggcactt 3780 acaatgattg cggacttttg agaatgtgac tctggtagcc gcaatactgt gcagtttgct 3840 caccttcatg ttttacctgt gtagcacaga ctgctgcatg ctgtgatgac atacggtttg 3900 cttttgtttc tggggctcac atttggacta cagctgatgc tacttgtctt tctgctgttt 3960 ttctttctcg tatggtggga ccagtttggc tgccgttgtg aaaacatgca gttgtaaata 4020 gtgtatattg aggtgtagat attcatttga tcctgtacat acattttctc tattttttta 4080 aaaaatgctg gttgataaac atacataggt cacaaacagg tcattccata acgtacaaca 4140 tactttttat aggcgtggag tctcttatct ctgtcccttt gtttctctct tttgaactgt 4200 tatccgagtc agcaagtgcc atttttgttg ccattttctt caagtgccaa tctcctaact 4260 gcatccccaa gagctggtgt aacgtcagaa gaacagtcga gaatctagcc tttgaaagac 4320 tttcaaccct caaacagacc atgtgcatac ctcctgtaac agcaaagctg ccacgacatt 4380 gaagcctgca tgaaatattg tttactattg tttttgctgc tattgctggg gcagtggaat 4440 ccaatgtggg tattgttact aattgtctgg ttgtccattg tacttttatt tgagttgcat 4500 tttgtggaac acttcacatg acaggctgca ctgcagcgcc ttcatctcat ccctaaattt 4560 aataaacctt cccctattta acccctacca tggcgcctcg gcgagtaaag cgtgcaaatg 4620 tctatgacct gtatcgcaca tgcaagcagg caggcacctg tcctccggat gtgataccta 4680 aggtggaagg gaagacgata gcagacaaga tattgcagta tggaagcatg ggcgtttatt 4740 taggcggcct aggcattgga acaggttctg gaaagccagg aacaggaggc tatattccac 4800 tcagaggtgg gggctctacc acttcactat caagcaaacc ttttgctggg gggataccct 4860 tagaaacctt agaagggata ggggcattcc ggcctggcat agtggaagat gcagggcctg 4920 ctttagaagg cattcttcct gacgcaccag cagttgtcac tcctgaggca gtgccagtgg 4980 atgaggggtt aagtgggcta gatatttcca gggaattaag ccaggaacaa attctcagct 5040 ttctccaccc tgagggtccg gatgatattg cagtacttga ggtaaggcca acagaacatg 5100 atcaggcaca tttgctgtct acaagcacac acccaaatcc actgtttcag ggtcctgtac 5160 agcaggcacg aattattgca gaaacatctg gtgcagaaaa cgtttttgtg ggtggaagtg 5220 gcattggaag caatgcagga gaggacattg aactgacact gtttgctgaa ccaaggacaa 5280 gtacacctga ggtgcctatt aaacgttctc ggggcatttt caattggttt agcaggcgct 5340 actatacaca ggtacctgtc gaagacccag acgagattgc tgctgcaggc tcgtatgtct 5400 ttgagaatcc tgtatacgat tcaaaggcgt tcaaacctgc gcagcagccg gacattactc 5460 tacaggatga agcttctgtc actgggcggg acgctgcaag attgctggcg ggaccctcgg 5520 gcaggattgg gtggagtcgt atcacacgac ccactagtct tggaacacgt agtggcgtga 5580 gggtaggccc tctttatcat ttacgatcct ctttcagcac tatccatagt cctgagacaa 5640 tagagctaat acccacagta cttgaggatg atactgaggt gcttacaggt gttcctgaga 5700 gagacactgg ttttgatgat gtggatttgg acagtatagc aagtgacagt ccattactac 5760 ctgagcggca tcaccttgct tttggagcaa ggcggtctca cattccaatt gtggcacgac 5820 caggtgttca aactggtaca gtgattgata cacgtcagat ggctgaaaac tctgtttacg 5880 tgtcggacaa tggaggacag gagtcacagc agacgcccac tgtggtaatc aatggcaaca 5940 ttaatgtgtc catggaatat tttaggcatt actatttgca ccctagcctt ctaggtcgca 6000 aacgaaaacg tctattcggt taatgtttta cagatggcgt tctggcagcc tagtcaaagg 6060 ctatacctgc ctcccacacc tgtgacaaag gtgctgtgct ctgagcaata tattaggcgt 6120 aaggacgtat tttatcacgg ggagacggag cgcatgctca ctgtagggca tccatattat 6180 gaaattaaac aatcagggtc tgggaaaacc attccaaagg tttcacctaa tcaatatcgt 6240 gtttttcgga tcttactgcc ggatcccaac cagtttgctc ttccagataa agccatgtat 6300 gacccaagta aggaaaggct agtctgggct gttgtggggg tacaggtgtc tagaggacaa 6360 cctttaggtg gctctgtttc aggacattcg tatcagaaca ctctgattga tgcggagaat 6420 gttagtaaaa aggtaaatgc acagggcaca gatgacagga agcagggagg catggacgtc 6480 aagcaacagc aaattctact gctaggatgc accccagcta ttggtgagta ttggacaact 6540 gctaggccct gcgttacaga taggccagag actggctcct gcccccctat agaactaaaa 6600 aacaaaccta tagaagatgg tgatatgatg gatattggct ttggtgcagc taatttcaaa 6660 gagttaaatg ccacaaagtc agatctccct ttagatattg caaaagatat ttgtttgtat 6720 cctgattatt taaagatgac tgaagaagcg gctggcaaca gtatgttttt ttttgctcgg 6780 aaagaacaag tttatgttcg ccacatctgg tcgcgtgggg gtaccgacaa agaaatgcct 6840 ccagaggcat actttctgaa gccaaagggt ggggaccaaa cacagaaaat gcctagtatt 6900 ctttttggag tgccaagtgg cagtttagtt tctacagatg gacaattgtt taatagacct 6960 tactggctgt ttcgtgcaca gggcatgaat aatggcatat gctggcttaa tcaactgttt 7020 gttactgttg gtgacaatac aagaggaacc acattaacca ttacggtgcc tacatccggg 7080 tccccactca ctgaatatga cacgagcaaa tttaatgttt ttcaaaggca tgttgaagaa 7140 tataagcttg cctttgtatt tcagctttgc tctgtcactc taagtccaga aaccgtctca 7200 catctccagg ggttaatgcc ttcgatcctg gaacactggg atattaacat gcagcctcct 7260 acgtcctcga ttcttgagga tacttacaga tatcttgaat cacctgctac taaatgtgca 7320 gataatgtaa cccctatggg acctgaagat ccctatgctg gtttaaagtt ttgggaggtg 7380 aatctaaaag aaaggttgtc tcttgatctt gatcaatttc ctctgggacg gcgttttctt 7440 gcgcagcaag gattagggtg cagtactaga aagagggttg cacctgtccc taaggtcacc 7500 gaaaaaagga ttgttaggaa aagaagaaag gggaattaag ggcatgaaat cttaaaaact 7560 gctgtgtttg ctaaataaat gcaatttttc ttatgtgtca agagtttatg tgtcatgtcc 7620 tgctgttcag tccaacttgc accacacccg gtgctggcat ctgattagac gcagtgtcag 7680 cagctttatg aaaagcagac acttggctag acacacaggc gcctggcgcc ctcatcgaat 7740 tggcgcaccg ctggcgttcg ggatcaaatt tcctctaccg ctgccggttg ttaaagcgcc 7800 cttcctgtac cgttcccggt agcgcctctt ctctcccttc agcgctaccg ctcccggtgt 7860 gcatggtaag taggcggtca ttgtcgaaga gaactggtaa gcaagtccga acaagaaaaa 7920 tgcttggcgc aacgctgacg gtagtcgcta ccgtccgcgg tgctcgcttt tctaagaaat 7980 gctcaaacgg tctcttgcta gctctgctcc tattggctgt gctgaaatta ctcacgccgc 8040 tttgcctgta ccgtgaacgg ttttgaatcc tactttttct cagggaatga ttgtt 8095 //