ID BPV1 STANDARD; ds-DNA; VRL; 7945 bp. XX DE Bovine papillomavirus type 1 (BPV-1), complete genome. XX AC J02044 XX DT 30-SEP-1988 XX OS Bovine papillomavirus type 1 DNA from cow, isolate 307. OC Bovine papillomavirus type 1 OC Viridae; ds-DNA nonenveloped viruses; Papovaviridae; OC Papillomavirus. XX RN [1] RP 1-7945 RA "Chen,E.Y., Howley,P.M., Levinson,A.D. and Seeburg,P.H.; RT The primary structure and genetic organization of the bovine RT papillomavirus type 1 genome"; RL Nature 299, 529-534 (1982). RN [2] RP 1-7945 RA Danos,O., Engel,L.W., Chen,E.T., Taniv,M., Howley,P.M.; RT "Comparative analysis of the human type 1a and bovine type RT papillomavirus genomes"; RL J. Virology 46, 557-566 (1983). XX XX [1] notes a number of open reading frames. This sequence has XX been corrected as stated in [2]: G changed to C at position XX 7305, and G deleted at position 7585. XX FT KEY Location/Qualifiers FT TATA_signal 58..63 FT /note="putative" FT CDS 91..504 FT /note="E6 ORF from bp 49 to 504." FT /product="transforming protein" FT /gene="E6" FT /note="putative" FT /codon_start=1 FT misc_feature 302..308 FT /standard_name="Splice donor site" FT /note="putative" FT CDS 479..862 FT /note="E7 ORF from bp 449 to 862" FT /product="transforming protein" FT /gene="E7" FT /note="putative" FT /codon_start=1 FT misc_feature 517..531 FT /standard_name="Splice acceptor site" FT /note="putative" FT CDS 849..2666 FT /note="E1 ORF from bp 813 to 2666" FT /product="replication protein" FT /gene="E1" FT /note="putative" FT /codon_start=1 FT misc_feature 862..868 FT /standard_name="Splice donor site" FT /note="putative" FT CDS 1204..1482 FT /note="E8 ORF from bp 1099 to 1482." FT /gene="E8" FT /note="putative" FT /codon_start=1 FT misc_feature 1233..1239 FT /standard_name="Splice donor site" FT /note="putative" FT misc_feature 2503..2509 FT /standard_name="Splice donor site" FT /note="putative" FT CDS 2608..3528 FT /note="E2 ORF from bp 2581 to 3528" FT /product="regulatory protein" FT /gene="E2" FT /note="putative" FT /codon_start=1 FT CDS 3191..3553 FT /note="E4 ORF from bp 3173 to 3553" FT /gene="E4" FT /note="putative" FT /codon_start=1 FT misc_feature 3214..3228 FT /standard_name="Splice acceptor site" FT /note="putative" FT CDS <3267..3839 FT /note="No methionine present in ORF." FT /gene="E3" FT /note="putative" FT /codon_start=1 FT CDS <3713..4012 FT /note="No methionine present in ORF." FT /gene="E5" FT /note="putative" FT /codon_start=1 FT TATA_signal 4072..4077 FT /note="putative" FT polyA_signal 4179..4184 FT /note="putative" FT CDS 4186..5595 FT /note="L2 ORF from bp 4171 to 5595" FT /product="minor capsid protein" FT /gene="L2" FT /note="putative" FT /codon_start=1 FT TATA_signal 5089..5094 FT /note="putative" FT CDS 5608..7095 FT /note="L1 ORF from bp 5596 to 7095" FT /product="major capsid protein" FT /gene="L1" FT /note="putative" FT /codon_start=1 FT polyA_signal 6433..6438 FT /note="putative" FT TATA_signal 6859..6864 FT /note="putative" FT polyA_signal 7091..7096 FT /note="putative" FT TATA_signal 7108..7113 FT /note="putative" FT polyA_signal 7155..7160 FT /note="putative" FT repeat_region 7778..7806 FT /rpt_type=Direct FT /rpt_unit=7778..7787, 7797..7806 FT /note="putative" FT source 1..7945 FT /organism="Bovine papillomavirus type 1" XX SQ SEQUENCE 7945 bp; 2270 a; 1714 c; 1886 g; 2075 t; gttaacaata atcacaccat caccgttttt tcaagcggga aaaaatagcc agctaactat 60 aaaaagctgc tgacagaccc cggttttcac atggacctga aaccttttgc aagaaccaat 120 ccattctcag ggttggattg tctgtggtgc agagagcctc ttacagaagt tgatgctttt 180 aggtgcatgg tcaaagactt tcatgttgta attcgggaag gctgtagata tggtgcatgt 240 accatttgtc ttgaaaactg tttagctact gaaagaagac tttggcaagg tgttccagta 300 acaggtgagg aagctgaatt attgcatggc aaaacacttg ataggctttg cataagatgc 360 tgctactgtg ggggcaaact aacaaaaaat gaaaaacatc ggcatgtgct ttttaatgag 420 cctttctgca aaaccagagc taacataatt agaggacgct gctacgactg ctgcagacat 480 ggttcaaggt ccaaataccc atagaaactt ggatgattca cctgcaggac cgttgctgat 540 tttaagtcca tgtgcaggca cacctaccag gtctcctgca gcacctgatg cacctgattt 600 cagacttccg tgccatttcg gccgtcctac taggaagcga ggtcccacta cccctccgct 660 ttcctctccc ggaaaactgt gtgcaacagg gccacgtcga gtgtattctg tgactgtctg 720 ctgtggaaac tgcggaaaag agctgacttt tgctgtgaag accagctcga cgtccctgct 780 tggatttgaa caccttttaa actcagattt agacctcttg tgtccacgtt gtgaatctcg 840 cgagcgtcat ggcaaacgat aaaggtagca attgggattc gggcttggga tgctcatatc 900 tgctgactga ggcagaatgt gaaagtgaca aagagaatga ggaacccggg gcaggtgtag 960 aactgtctgt ggaatctgat cggtatgata gccaggatga ggattttgtt gacaatgcat 1020 cagtctttca gggaaatcac ctggaggtct tccaggcatt agagaaaaag gcgggtgagg 1080 agcagatttt aaatttgaaa agaaaagtat tggggagttc gcaaaacagc agcggttccg 1140 aagcatctga aactccagtt aaaagacgga aatcaggagc aaagcgaaga ttatttgctg 1200 aaaatgaagc taaccgtgtt cttacgcccc tccaggtaca gggggagggg gaggggaggc 1260 aagaacttaa tgaggagcag gcaattagtc atctacatct gcagcttgtt aaatctaaaa 1320 atgctacagt ttttaagctg gggctcttta aatctttgtt cctttgtagc ttccatgata 1380 ttacgaggtt gtttaagaat gataagacca ctaatcagca atgggtgctg gctgtgtttg 1440 gccttgcaga ggtgtttttt gaggcgagtt tcgaactcct aaagaagcag tgtagttttc 1500 tgcagatgca aaaaagatct catgaaggag gaacttgtgc agtttactta atctgcttta 1560 acacagctaa aagcagagaa acagtccgga atctgatggc aaacacgcta aatgtaagag 1620 aagagtgttt gatgctgcag ccagctaaaa ttcgaggact cagcgcagct ctattctggt 1680 ttaaaagtag tttgtcaccc gctacactta aacatggtgc tttacctgag tggatacggg 1740 cgcaaactac tctgaacgag agcttgcaga ccgagaaatt cgacttcgga actatggtgc 1800 aatgggccta tgatcacaaa tatgctgagg agtctaaaat agcctatgaa tatgctttgg 1860 ctgcaggatc tgatagcaat gcacgggctt ttttagcaac taacagccaa gctaagcatg 1920 tgaaggactg tgcaactatg gtaagacact atctaagagc tgaaacacaa gcattaagca 1980 tgcctgcata tattaaagct aggtgcaagc tggcaactgg ggaaggaagc tggaagtcta 2040 tcctaacttt ttttaactat cagaatattg aattaattac ctttattaat gctttaaagc 2100 tctggctaaa aggaattcca aaaaaaaact gtttagcatt tattggccct ccaaacacag 2160 gcaagtctat gctctgcaac tcattaattc attttttggg tggtagtgtt ttatcttttg 2220 ccaaccataa aagtcacttt tggcttgctt ccctagcaga tactagagct gctttagtag 2280 atgatgctac tcatgcttgc tggaggtact ttgacacata cctcagaaat gcattggatg 2340 gctaccctgt cagtattgat agaaaacaca aagcagcggt tcaaattaaa gctccacccc 2400 tcctggtaac cagtaatatt gatgtgcagg cagaggacag atatttgtac ttgcatagtc 2460 gggtgcaaac ctttcgcttt gagcagccat gcacagatga atcgggtgag caacctttta 2520 atattactga tgcagattgg aaatcttttt ttgtaaggtt atgggggcgt ttagacctga 2580 ttgacgagga ggaggatagt gaagaggatg gagacagcat gcgaacgttt acatgtagcg 2640 caagaaacac aaatgcagtt gattgagaaa agtagtgata agttgcaaga tcatatactg 2700 tactggactg ctgttagaac tgagaacaca ctgctttatg ctgcaaggaa aaaaggggtg 2760 actgtcctag gacactgcag agtaccacac tctgtagttt gtcaagagag agccaagcag 2820 gccattgaaa tgcagttgtc tttgcaggag ttaagcaaaa ctgagtttgg ggatgaacca 2880 tggtctttgc ttgacacaag ctgggaccga tatatgtcag aacctaaacg gtgctttaag 2940 aaaggcgcca gggtggtaga ggtggagttt gatggaaatg caagcaatac aaactggtac 3000 actgtctaca gcaatttgta catgcgcaca gaggacggct ggcagcttgc caaggctggg 3060 gctgacggaa ctgggctcta ctactgcacc atggccggtg ctggacgcat ttactattct 3120 cgctttggtg acgaggcagc cagatttagt acaacagggc attactctgt aagagatcag 3180 gacagagtgt atgctggtgt ctcatccacc tcttctgatt ttagagatcg cccagacgga 3240 gtctgggtcg catccgaagg acctgaagga gaccctgcag gaaaagaagc cgagccagcc 3300 cagcctgtct cttctttgct cggctccccc gcctgcggtc ccatcagagc aggcctcggt 3360 tgggtacggg acggtcctcg ctcgcacccc tacaattttc ctgcaggctc ggggggctct 3420 attctccgct cttcctccac cccgtgcagg gcacggtacc ggtggacttg gcatcaaggc 3480 aggaagaaga ggagcagtcg cccgactcca cagaggaaga accagtgact ctcccaaggc 3540 gcaccaccaa tgatggattc cacctgttaa aggcaggagg gtcatgcttt gctctaattt 3600 caggaactgc taaccaggta aagtgctatc gctttcgggt gaaaaagaac catagacatc 3660 gctacgagaa ctgcaccacc acctggttca cagttgctga caacggtgct gaaagacaag 3720 gacaagcaca aatactgatc acctttggat cgccaagtca aaggcaagac tttctgaaac 3780 atgtaccact acctcctgga atgaacattt ccggctttac agccagcttg gacttctgat 3840 cactgccatt gccttttctt catctgactg gtgtactatg ccaaatctat ggtttctatt 3900 gttcttggga ctagttgctg caatgcaact gctgctatta ctgttcttac tcttgttttt 3960 tcttgtatac tgggatcatt ttgagtgctc ctgtacaggt ctgccctttt aatgccttta 4020 catcactggc tattggctgt gtttttactg ttgtgtggat ttgatttgtt ttatatactg 4080 tatgaagttt tttcatttgt gcttgtattg ctgtttgtaa gttttttact agagtttgta 4140 ttccccctgc tcagatttta tatggtttaa gctgcagcaa taaaaatgag tgcacgaaaa 4200 agagtaaaac gtgccagtgc ctatgacctg tacaggacat gcaagcaagc gggcacatgt 4260 ccaccagatg tgatacgaaa ggtagaagga gatactatag cagataaaat tttgaaattt 4320 gggggtcttg caatctactt aggagggcta ggaataggaa catggtctac tggaagggtt 4380 gctgcaggtg gatcaccaag gtacacacca ctccgaacag cagggtccac atcatcgctt 4440 gcatcaatag gatccagagc tgtaacagca gggacccgcc ccagtatagg tgcgggcatt 4500 cctttagaca cccttgaaac tcttggggcc ttgcgtccag gggtgtatga ggacactgtg 4560 ctaccagagg cccctgcaat agtcactcct gatgctgttc ctgcagattc agggcttgat 4620 gccctgtcca taggtacaga ctcgtccacg gagaccctca ttactctgct agagcctgag 4680 ggtcccgagg acatagcggt tcttgagctg caacccctgg accgtccaac ttggcaagta 4740 agcaatgctg ttcatcagtc ctctgcatac cacgcccctc tgcagctgca atcgtccatt 4800 gcagaaacat ctggtttaga aaatattttt gtaggaggct cgggtttagg ggatacagga 4860 ggagaaaaca ttgaactgac atacttcggg tccccacgaa caagcacgcc ccgcagtatt 4920 gcctctaaat cacgtggcat tttaaactgg ttcagtaaac ggtactacac acaggtgccc 4980 acggaagatc ctgaagtgtt ttcatcccaa acatttgcaa acccactgta tgaagcagaa 5040 ccagctgtgc ttaagggacc tagtggacgt gttggactca gtcaggttta taaacctgat 5100 acacttacaa cacgtagcgg gacagaggtg ggaccacagc tacatgtcag gtactcattg 5160 agtactatac atgaagatgt agaagcaatc ccctacacag ttgatgaaaa tacacaggga 5220 cttgcattcg tacccttgca tgaagagcaa gcaggttttg aggagataga attagatgat 5280 tttagtgaga cacatagact gctacctcag aacacctctt ctacacctgt tggtagtggt 5340 gtacgaagaa gcctcattcc aactcaggaa tttagtgcaa cacggcctac aggtgttgta 5400 acctatggct cacctgacac ttactctgct agcccagtta ctgaccctga ttctacctct 5460 cctagtctag ttatcgatga cactactact acaccaatca ttataattga tgggcacaca 5520 gttgatttgt acagcagtaa ctacaccttg catccctcct tgttgaggaa acgaaaaaaa 5580 cggaaacatg cctaattttt tttgcagatg gcgttgtggc aacaaggcca gaagctgtat 5640 ctccctccaa cccctgtaag caaggtgctt tgcagtgaaa cctatgtgca aagaaaaagc 5700 attttttatc atgcagaaac ggagcgcctg ctaactatag gacatccata ttacccagtg 5760 tctatcgggg ccaaaactgt tcctaaggtc tctgcaaatc agtatagggt atttaaaata 5820 caactacctg atcccaatca atttgcacta cctgacagga ctgttcacaa cccaagtaaa 5880 gagcggctgg tgtggccagt cataggtgtg caggtgtcca gagggcagcc tcttggaggt 5940 actgtaactg ggcaccccac ttttaatgct ttgcttgatg cagaaaatgt gaatagaaaa 6000 gtcaccaccc aaacaacaga tgacaggaaa caaacaggcc tagatgctaa gcaacaacag 6060 attctgttgc taggctgtac ccctgctgaa ggggaatatt ggacaacagc ccgtccatgt 6120 gttactgatc gtctagaaaa tggcgcctgc cctcctcttg aattaaaaaa caagcacata 6180 gaagatgggg atatgatgga aattgggttt ggtgcagcca acttcaaaga aattaatgca 6240 agtaaatcag atctacctct tgacattcaa aatgagatct gcttgtaccc agactacctc 6300 aaaatggctg aggacgctgc tggtaatagc atgttctttt ttgcaaggaa agaacaggtg 6360 tatgttagac acatctggac cagagggggc tcggagaaag aagcccctac cacagatttt 6420 tatttaaaga ataataaagg ggatgccacc cttaaaatac ccagtgtgca ttttggtagt 6480 cccagtggct cactagtctc aactgataat caaattttta atcggcccta ctggctattc 6540 cgtgcccagg gcatgaacaa tggaattgca tggaataatt tattgttttt aacagtgggg 6600 gacaatacac gtggtactaa tcttaccata agtgtagcct cagatggaac cccactaaca 6660 gagtatgata gctcaaaatt caatgtatac catagacata tggaagaata taagctagcc 6720 tttatattag agctatgctc tgtggaaatc acagctcaaa ctgtgtcaca tctgcaagga 6780 cttatgccct ctgtgcttga aaattgggaa ataggtgtgc agcctcctac ctcatcgata 6840 ttagaggaca cctatcgcta tatagagtct cctgcaacta aatgtgcaag caatgtaatt 6900 cctgcaaaag aagaccctta tgcagggttt aagttttgga acatagatct taaagaaaag 6960 ctttctttgg acttagatca atttcccttg ggaagaagat ttttagcaca gcaaggggca 7020 ggatgttcaa ctgtgagaaa acgaagaatt agccaaaaaa cttccagtaa gcctgcaaaa 7080 aaaaaaaaaa aataaaagct aagtttctat aaatgttctg taaatgtaaa acagaaggta 7140 agtcaactgc acctaataaa aatcacttaa tagcaatgtg ctgtgtcagt tgtttattgg 7200 aaccacaccc ggtacacatc ctgtccagca tttgcagtgc gtgcattgaa ttattgtgct 7260 ggctagactt catggcgcct ggcaccgaat cctgccttct cagccaaaat gaataattgc 7320 tttgttggca agaaactaag catcaatggg acgcgtgcaa agcaccggcg gcggtagatg 7380 cggggtaagt actgaatttt aattcgacct atcccggtaa agcgaaagcg acacgctttt 7440 ttttcacaca tagcgggacc gaacacgtta taagtatcga ttaggtctat ttttgtctct 7500 ctgtcggaac cagaactggt aaaagtttcc attgcgtctg ggcttgtcta tcattgcgtc 7560 tctatggttt ttggaggatt agacgggcca ccagtaatgg tgcatagcgg atgtctgtac 7620 cgccatcggt gcaccgatat aggtttgggg ctccccaagg gactgctggg atgacagctt 7680 catattatat tgaatgggcg cataatcagc ttaattggtg aggacaagct acaagttgta 7740 acctgatctc cacaaagtac gttgccggtc ggggtcaaac cgtcttcggt gctcgaaacc 7800 gccttaaact acagacaggt cccagccaag taggcggatc aaaacctcaa aaaggcggga 7860 gccaatcaaa atgcagcatt atattttaag ctcaccgaaa ccggtaagta aagactatgt 7920 attttttccc agtgaataat tgtt 7945 //